BAC Information

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BAC

Clone NameMSMg01-450F06
Chromosome5 (Build37)
Map Location 42,641,271 - 42,641,726
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450F06.T7 (MSMg01no450_f06.b1)MSMg01-450F06.TJ (MSMg01no450_f06.g1)
ACCAG538084AG538085
length767686
length of high quality
(start - end)
460 (76 - 535)50 (68 - 117)
definitionCHROMAT_FILE: MSMg01no450_f06.b1 PHD_FILE: MSMg01no450_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:12 2005CHROMAT_FILE: MSMg01no450_f06.g1 PHD_FILE: MSMg01no450_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGGCG
CGGAATTCCAATGGTTCTGAGAAAAAGTTAAGCATAGTAGAGATTGGGGC
TTTTTTTCTTCTTCTTCAGGAATTTTCATAGGTTTTCTAAGATTTATAAA
TTTCACTAGCACACCCTGGTCTTCTTTGTTGCACTTCTCAGTTTGTAGAC
CATGAGACTAGAGTGTTTCAAGTTAGAAACAACAACAACAACAAAAAAAA
AAACAATAACAACAAAAAAGAATTCCTTATAAAATGTATTTAGAAGTGTA
TGGGAACTGGGGTAGTGGGGGATTTTTTAAATGGTTTTAATTTTCAGACA
CTAAAAACAACTACACAGAGGGCACATTTTCTAAGGAATCCATGTTGGAT
TTCATTGTTTTTGGTTTTGCTTGTTTGTTTTTTTATGTTCCTGAAGTCCT
AAATAAGGTGAGCCAAAAATTCTGTGTTCAAACTAAACCAGGAGAGTGTA
TAACAAGCCACTGATACCCACTTACACTTGGTAACCAGCTTACAAAATAA
ATTTTTAATGCCCTATGTCAGTGGTTGTCAACCTGCTGAATCACAACCTT
TTCAGGGGTTTTATAACTCTTTACAGGGCTTTCCTATAACTATTATATAA
CCTGCATGCATACTTCTATGGCTCAATCATAATAAATTTATCGTTTACGA
AGCAACCTTTGACATCTCTTTTACGATCGCCGGTTCTTAAGAATTACTAC
TACTCGTCTTTCCCGGG
CGATGCTCNGNNANCCTGNCGCCGCCTGTTCTNCACTTTAGGTGACCTAT
GATTTACAACAAAAATTCTCTGTTTAGCTTTGACCCCATTTTTAATGGGG
TTATTTGATTTTCAGGAGTCGCAGCTTNNNTCTTTCTTGNNATAATTGNA
ATTATNCCTCTATCTGATTAGATTGGTAAGATCTTTCCAAACTGTGNNGC
CTTTTTGCTATTGACATGGCCCTTGCTTACTTAACTTTCCNATTAANANA
CCCTTTTGCAATCTTGGACCTACNNGGAACCAATGCTTTCTGCTTGAATT
TTTCCCGGGCCAAAACCGGAANCTTTCACCCCATAATTTCANGCCCCCCT
TTTTNGNAAATTTTTTTCCCCCAAACTTATTTTTTCCACNTAATAAAAAA
AAACCTCCCTCTCTCTTTAAAAAACCCCCCNNAAACACCCCCTTTTTTAA
ACATTTTTTTCCCCCCNCGNTNTAATCCCTTCTAAAAAACATGCACACAA
TTTNTNATTCCTCCCCTCNNCCCCCCCCCCCCCCCCNCTATTTTCCCCCC
TCCTCATCCTCCCCCTCTCCTTCTCCTTCTTTTTTTTTTTCCACCACCCC
CCCTTTCTCCTCCCCCCCCTCCCTCTCCCCCCCCCTTTTTCCCCCCCTTC
CCCCCTTCCCATTTATTATCTCTCTGGTGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_f06.b1 MSMg01no450_f06.b1 CHROMAT_FILE:
MSMg01no450_f06.b1 PHD_FILE: MSMg01no450_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:12 2005
         (460 letters)



>mm_chr5_42640881_42641739
          Length = 859

 Score =  797 bits (412), Expect = 0.0
 Identities = 448/462 (96%), Gaps = 8/462 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttaagcatagtagagattggggctttttttcttcttcttcaggaattttcataggttt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 846 agttaagcatagtagagattggtgctttttttcttcttcttcaggaattttcataggttt 787

                                                                       
Query: 61  tctaagatttataaatttcactagcacaccctggtcttctttgttgcacttctcagtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tctaagatttataaatttcactagcacaccctggtcttctttgttgcacttctcagtttg 727

                                                                       
Query: 121 tagaccatgagactagagtgtttcaagttagaaac-aac-aacaacaacaaaaaaaaaaa 178
           ||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||||||
Sbjct: 726 tagaccatgagactagagtgtttcaagttagaaacaaacaaaca--aacaaaaaaaaaaa 669

                                                                       
Query: 179 caataacaacaaaaaagaattccttataaaatgtatttagaagtgtatgggaactggggt 238
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 c---aacaacaaaaaagaattccttataaaatgtatttagaagtgtatgggaactggggt 612

                                                                       
Query: 239 agtgggggattttttaaatggttttaattttcagacactaaaaacaactacacagagggc 298
           || |||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agggggggattctccaaatggttttaattttcagacactaaaaacaactacacagagggc 552

                                                                       
Query: 299 acattttctaaggaatccatgttggatttcattgtttttggttttgcttgtttgtttttt 358
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 551 acattttctaaggaatccatgttggatttcattgtttttggttttgtttgtttgtttttt 492

                                                                       
Query: 359 tatgttcctgaagtcctaaataaggtgagccaaaaattctgtgttcaaactaaaccagga 418
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 -atgttcctgaagtcctaaataaggtgagccaaaaattctgtgttcaaactaaaccagga 433

                                                     
Query: 419 gagtgtataacaagccactgatacccacttacacttggtaac 460
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gagtgtataacaagccactgatacccacttacacttggtaac 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 859
Length adjustment: 10
Effective length of query: 450
Effective length of database: 849
Effective search space:   382050
Effective search space used:   382050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)