BAC Information

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BAC

Clone NameMSMg01-450I07
Chromosome5 (Build37)
Map Location 72,271,828 - 72,272,163
singlet/doubletsinglet
Overlap geneGabrb1
Upstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450I07.T7 (MSMg01no450_i07.b1)MSMg01-450I07.TJ (MSMg01no450_i07.g1)
ACCAG538229AG538230
length750742
length of high quality
(start - end)
254 (324 - 577)337 (329 - 665)
definitionCHROMAT_FILE: MSMg01no450_i07.b1 PHD_FILE: MSMg01no450_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:28 2005CHROMAT_FILE: MSMg01no450_i07.g1 PHD_FILE: MSMg01no450_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACGAGGATCCGC
GGAANTCTCAATCAAGAAATCGTGAATGGNGAAGAAACACTTAAAGAAAA
TGTTCAATATCCTCATTCATCAGGGAAATGTAAATGAAAATGACTTTGAA
GTTCCCCCTTATGTCCATCGGAAGTGCTAAGATGAAAAACTCAAGAGACA
GCACATGCTGATGAGGATGTGGAGCAAGTGGAACACTCCTTTTTTGTTGT
TGGGAGTGCAAACTTGTACAATAATTCTGGAAATCAATTTAGCATATTCT
CAAAAAATGGGTATAAGTTCTACCTGAAAACCCAGCTATACCACTCCTGA
GTATATACCCAAAAGATGTTCCACCATCCCACAAGGAAGCTTTATTTGTG
TAGTCAGATATCACATGTACATATTTTTATGATACTTACTTTGGGGTTTT
ATTTCTTTGTTTGTTTTGTTCTGTCCTATAAAAAAAAAAGAAAAAGAAGA
AGGGAAAGAAAGAAAGAGGGAGAGAAAAGGAAGGAAAGAAGGAAGGAAGG
AAGAAAGGAAGGAAGGAAGGAAGGAAGCAAGTTNGTTTNGTGCCCTTTTN
GGTGGTCCGCTCTTCCCCTCGTCCGCCGCGCCCGNCCGCCGACTTTTTTT
TTTTTTTTGCCACCCCCCCCCGAGCTCCTTCTCCCTCTTCCTATCATATT
CGCCCGCATTCTCTGCTCTCTCTTTCATTCTCTCCCGCCACTTTTTTTCT

NGGCGAATATAGGTGTAGGCCTGGNGGNCGCCTGGTTCATAAGTGGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCGAATATGGACTCATTAC
TCTGTGTTGGAGGACCTAACAAAATTTTGTACATTTGAAAATGATCACGA
CCTTGAGAGAGGTATTTCTGTGTATTCTGTGTACCTTCTGTAACTCTTCT
TGTGTCTGTAATGGAAAACAACAGGTGACTGACATAGAAACACAAATACA
AATGCCCTTTGAGAGTAATGTATGTAGAATATCAGTGGGGTTTTATGAAG
AACACAGACAGGGAAATGAGATTATTTTTTTCCACCTTGTTCTCAATGTT
TCTAGTCATTTTTCAAAAATGGCTGGAGGAAACAGAGGAGTTGATCCCTT
CTAAAATAAGGAAATTAATGTTCACATTATTATATTGTTATATCTGTAAT
ACCAGAAGAGAAATATCAAACAAATGAAAATGTTCATATCTAGGGGTAAA
AATATAATGGAGGACTGTGGTAGTAAATATTTAATCACAAATTGGAGTTT
CTACCCTACTTATTCAGTTCCCAAATAAAAGACACACAACTTTTATATTT
ATAATAAGCCTTTAATGTACTAGAGCTGGGCAGATTTCTACCCTCTATGC
TATTGGTATCTACTTCTCTGTCAATAACTCCAAAATATAACTTGCCATGC
TGCATCTGGCCAGCTCCTAACTTCTTTTAGCCAGCCCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_i07.g1 MSMg01no450_i07.g1 CHROMAT_FILE:
MSMg01no450_i07.g1 PHD_FILE: MSMg01no450_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:28 2005
         (337 letters)



>mm_chr5_72271777_72272513
          Length = 737

 Score =  634 bits (328), Expect = 0.0
 Identities = 334/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   ttccaccttgttctcaatgtttctagtcatttttcaaaaatggctggaggaaacagagga 61
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 387 ttccaccttgttctcaatgtttctagtcattttgcaaaaatggctggaggaaacagagga 328

                                                                       
Query: 62  gttgatcccttctaaaataaggaaattaatgttcacattattatattgttatatctgtaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gttgatcccttctaaaataaggaaattaatgttcacattattatattgttatatctgtaa 268

                                                                       
Query: 122 taccagaagagaaatatcaaacaaatgaaaatgttcatatctaggggtaaaaatataatg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taccagaagagaaatatcaaacaaatgaaaatgttcatatctaggggtaaaaatataatg 208

                                                                       
Query: 182 gaggactgtggtagtaaatatttaatcacaaattggagtttctaccctacttattcagtt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaggactgtggtagtaaatatttaatcacaaattggagtttctaccctacttattcagtt 148

                                                                       
Query: 242 cccaaataaaagacacacaacttttatatttataataagcctttaatgtactagagctgg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cccaaataaaagacacacaacttttatatttataataagcctttaatgtactagagctgg 88

                                               
Query: 302 gcagatttctaccctctatgctattggtatctactt 337
           |||||| |||||||||||||||||||||||||||||
Sbjct: 87  gcagatatctaccctctatgctattggtatctactt 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)