BAC Information

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BAC

Clone NameMSMg01-450J04
Chromosome5 (Build37)
Map Location 142,905,943 - 142,906,186
singlet/doubletsinglet
Overlap geneFoxk1
Upstream geneSdk1, LOC666727
Downstream geneC330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450J04.T7 (MSMg01no450_j04.b1)MSMg01-450J04.TJ (MSMg01no450_j04.g1)
ACCAG538269AG538270
length856771
length of high quality
(start - end)
---246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no450_j04.b1 PHD_FILE: MSMg01no450_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:33 2005CHROMAT_FILE: MSMg01no450_j04.g1 PHD_FILE: MSMg01no450_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGACTATAATTTGCGGCGCAAANANNCCTAATCCTACCGCNGNGGAAN
NNNATAATACCTCACTGGGGTNNAGNANTTGGGATNAGAGGNAGGAGGAT
CTTTGTTTTATTCCAGGGAGCCTGATCTACAGAGCCTGATCTAGGAAGTT
AGGGCTACACAGGCTTGAAACACGAGGGAGAGAGAGAGACAGAGAGAGAG
AGAGAGAGAGAGCGAGTATCGGTTCCTCAAGTAATTGGAGCGCCACTGTG
TTTTTTTTGTTATGTCCGCGAATTTTAGGCACTTCCGGGCACCCCCTCCT
CTTCTCTCTCTTCTCTCTTCTTTCTCTTCTTTTTTTGCCTTTCTACCTTT
CCTCCTACTTCTTTCTCTTCTTCATCTCTTTTCTCATTCTTCTCCGTTGT
TGTTTTCTCCTTTTTTTTTTTCTTCTTTCCCTCTCGCCCCCGACACGGAA
ACCCCCCCTCCCTGATTATTTTTTTGTTTTCTCTACTTCTTACTCCTCTC
CGACTATTGCCCCGGAACCCCACACTTACAGCCCTATCTTTCCTCTCTCG
TCCCCTTTCTCCCCTTCGCCCCTTTTTCCTTTTTACTAATGATTGCGCCC
CCACAAAGAGATCTTTTTTTTTGTTTTCGCGGTCCCCTCCGTTTTTCCCC
CCTTCCCGCCTATTCCTATCCGTTTCACTTTCCTTTTTTTTTTTCCCCTC
CTCTTTCCGTTTCTTCTCCATCCTTCCTTCGTTTCCGTCTTTTCCTTCTT
CTTCCTTTTCCCCTGTGCCTTCCCGTTTCGCCNNNNNNNNNCTGTGGCAT
GGCTGCCACCGTTTTTTTCTTATGCTGTTGCCTATTGTCCTTCCTTCTGC
CGCTTN
CCCGATGCATTGNTAGGCCGGGNGGNCGCCTGTTTTCAAAACTGAGGTGA
ACTATAGAAGTTTCGCAAAACTCTCTCTGNAGNCCAGGTTAGCCTTGAAC
TCACTGTGTAGCCCTGATCCTCCTGCCTCAGCCTCCTGAATAAGGGATAC
TGGCAGGAGTGTGCCACTCATTCCTGCTGCAAAGTCTGTCCTCTGGGGTG
TTCACACTGTGGAGTGGGGTGTTCACACTGTGGAGTGGGGTGCTCAAGCC
TTTGCTCGCTTGGGTGGCTCCCCTCCAAGTCTGAGCCAGTCCCCACTGTG
GGAGGTCACAGAGTGGTCNCTCNGTTTCTGGCATCTCAAGCTGGGAATCT
GTTTCCATCCCTCAGCCATGCTTGCTGTGTACTGTCCCCTGCAGACCCCA
GCTTCCCCAGCTCACTGCCCACTCCGTGAAGGCCTGGCTCTGCAGGGATG
GAGGATAGGGTGCGCCTACTATCATGATAGCACACCCCTCGTTGCTTTCT
TATGTGTTCCTCTTTATTGTTAGAATTTCACTATTTCTTCTTTCCCCCAT
TTTTTTTTTACTTTCCCTCGTCTCCAATATCTCGTATCCCTTTTTTTTCT
CCCCGTTCTTTTTTTTTTTTCTCTTCTTTCTTTTTTCTTCCTCCTTTTTT
TTTTTTCCCCTCTTTTTTTTTTTTTTTTTACCCCCCAAATTTATTATTTC
TTTTTTTTCTTTCAATTTCTTTATTTCTCCAATTTTAATTTAACAATATA
TTACTATATTTTTTAATCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_j04.g1 MSMg01no450_j04.g1 CHROMAT_FILE:
MSMg01no450_j04.g1 PHD_FILE: MSMg01no450_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:33 2005
         (246 letters)



>mm_chr5_142905743_142906388
          Length = 646

 Score =  414 bits (214), Expect = e-120
 Identities = 236/244 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctctgnagnccaggttagccttgaactcactgtgtagccctgatcctcctgcctcagc 60
           ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ctctctgtagtccaggttagccttgaactcactttgtagccctgatcctcctgcctcagc 260

                                                                       
Query: 61  ctcctgaataagggatactggcaggagtgtgccactcattcctgctgcaaagtctgtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ctcctgaataagggatactggcaggagtgtgccactcattcctgccgcaaagtctgtcct 320

                                                                       
Query: 121 ctggggtgttcacactgtggagtggggtgttcacactgtggagtggggtgctcaagcctt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  
Sbjct: 321 ctggggtgttcacactgtggagtggggtgttcacactgtgcagtggggtgctcaagccac 380

                                                                       
Query: 181 tgctcgcttgggtggctcccctccaagtctgagccagtccccactgtgggaggtcacaga 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tgctcgcttgggtggctcccctccaagtctgagccagtccccaccgtgggaggtcacaga 440

               
Query: 241 gtgg 244
           ||||
Sbjct: 441 gtgg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)