BAC Information

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BAC

Clone NameMSMg01-450K02
Chromosome5 (Build37)
Map Location 132,902,608 - 132,902,840
singlet/doubletsinglet
Overlap geneAuts2
Upstream gene4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450K02.T7 (MSMg01no450_k02.b1)MSMg01-450K02.TJ (MSMg01no450_k02.g1)
ACCAG538313AG538314
length764743
length of high quality
(start - end)
96 (132 - 227)240 (85 - 324)
definitionCHROMAT_FILE: MSMg01no450_k02.b1 PHD_FILE: MSMg01no450_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:37 2005CHROMAT_FILE: MSMg01no450_k02.g1 PHD_FILE: MSMg01no450_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAATTTGGGCGCAAAGANNCCTATTCGTACCGCCGCGGAANCACATT
TTGCTGCACGGGGGAAGAAAGAGAAGACCCGGGGCCCGGAACGACANNGT
TTCCCCACAACAGGCCCCAGGGACCAGGNCCCCAACAAGGCTCACCTACT
CCAAAAAAGGCCACACTTAGTCCAAAAAGGCCACACCTCCAATAATGCCA
TTCCTTATGAGCCTATGGGAGTTGTTATTTTCTTTTAAACCTCCACAAGC
TCATTACTCAGGCGAGTCTATATTCTGTCAATGTTCTAGCCAGGATTTTT
TTTTTTCAACAAAACACCAGGACCAAAAAGCAAGCCGGAGAGGACAGCCC
CCACCCGGCCGACACGGCGACAGCACAACCCACCAAGGGAGGAACCCCCG
ACAGGGACGCAAGCAGGGCCGGAACCCCCAGGAAAGAGCCGAANCCAAGA
CCAAGCAGGACGCAGCCCACCGGAACGCACCCCCAGGCCCGCACAGCCCG
CCAACGCACAAAACCCAGGACCACCCGCCCAGGGAAGGAACCCCCCAGAC
CCAAGCCCCAACACCCAACAACCGAAACCGAACGGACACACACACCGACC
CCCGCCACCCCACGGACCCCCCAACCCCCACAACCCCCAAACCCGCCCCA
CCCTCACGAACCCCCAGCCCCCCGCGCAACGAACACCCCGCCCCCACCCT
ATCCACCTACCCGCCTCCCCACTCGCCCCCCGCAACGCACCGCACTATTC
CCTTGGCCCGCCCG
GGCGATGATAGTGGGAGGCCGGGGGGNCGCCTGTTCAAAAAAGGGGAGGT
GACACTATAGAAGTTACAAAAAAAAGTCCNGAGACATGAGACACCCAAGA
TATTTGCTAACACATATTTGCTTTTTTTTTTTATCCTCACAAACACCTAT
GGGCAGGTAACATTATCACCCCAACTGTACAAAAGAAGAAATTTGGTCAT
GGTTGCTTTAATAATGGGAAAGCTAAGGTTGGGAAGTAAGCAGTCAGACT
TCAGAATTAAGCATTAGTCACGATACTAGTAGTGAAGCCCATCTTTTAAA
TATAACTAAGATTCTCCTTTCTTAGTGATTGAATTCGAACACAGAGGTTT
TCCTATAATTTCTGAAGAGGTTTCAAAGACTCACACAACCTGTGTAACAC
TGCATATTCACACAAGAACACTTCCAGTGACTAAGCTAAGGGGTCGTGTC
CTTACTAGCTTTGTGAGTAAAGAAGACAGTGCTGGTGGTAACGCAATGTG
AGCATCTCTTGGGAGCAGGGACTATTATCTTCTAATGCTTTGGTTCTGCT
AGGGCTCTCATCATCTGCTGAAATTAAATGTCTTCTGATGGATAGGTAAT
AAGAGGATACTACCCACTCTTATAATGTTTCTGCGAAAAACTGCCGGCTA
CCTCCTGGATTTGTTCCCGGCTTTCAGAACTGTGACCAAAAGTAAGTTTC
ACCGGCGCCCTTTGATCCTGACTTTTTTCCTAGCCCCAATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_k02.g1 MSMg01no450_k02.g1 CHROMAT_FILE:
MSMg01no450_k02.g1 PHD_FILE: MSMg01no450_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:37 2005
         (240 letters)



>mm_chr5_132902404_132903043
          Length = 640

 Score =  410 bits (212), Expect = e-119
 Identities = 229/236 (97%), Gaps = 3/236 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   atgagacacccaagatatttgctaacacatatttgctttttttttttatcctcacaaaca 61
           ||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||
Sbjct: 205 atgagacacccaagatatttgctaacacatatttgc---ttttttttgtcctcacaaaca 261

                                                                       
Query: 62  cctatgggcaggtaacattatcaccccaactgtacaaaagaagaaatttggtcatggttg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cctatgggcaggtaacattatcaccccaactgtacaaaagaagaaatttggtcatggttg 321

                                                                       
Query: 122 ctttaataatgggaaagctaaggttgggaagtaagcagtcagacttcagaattaagcatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 322 ctttaataatgggaaagctaaggttgggaagtaagcagtcagacttcagaactaagcatt 381

                                                                   
Query: 182 agtcacgatactagtagtgaagcccatcttttaaatataactaagattctcctttc 237
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 382 agtcacgatacgagtagtgaagcccatcttttaaatataactaaggttctcctttc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)