Query= MSMg01no451_e14.b1 MSMg01no451_e14.b1 CHROMAT_FILE:
MSMg01no451_e14.b1 PHD_FILE: MSMg01no451_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:29 2005
(605 letters)
>mm_chr5_4554344_4555351
Length = 1008
Score = 1023 bits (529), Expect = 0.0
Identities = 586/607 (96%), Gaps = 6/607 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaactgacgaaactcgaatggtcgagaagaacctaaagaaatgttcaatattg 64
|||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 202 gaattctcaactgaggaaactcgaatgatcgagaagcacctaaagaaatgttcaatattg 261
Query: 65 ttagtcatcagggaaatgcaaatcaaaacaaccctatagggaattctacaaacacctgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttagtcatcagggaaatgcaaatcaaaacaaccctatagggaattctacaaacacctgaa 321
Query: 125 taaacctcc-ttttccattattttcaagtctttttcttttatttttctttgctgttc--t 181
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 322 taaacctcctttttccattattttcaagtatttttcttttatttttctttgctgttcttt 381
Query: 182 tttttttctcttttcttttctttttctttttatttttttgagatgcaagatgttgagata 241
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 382 tttttttcttttttcttttctttttctttttctttttttgagatgcaagatgttgagata 441
Query: 242 gctctgcttagtttagcttgcccatcctttggcctgcagaataacaaccaaaaaataata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctctgcttagtttagcttgcccatcctttggcctgcagaataacaaccaaaaaataata 501
Query: 302 ccaactcccaatgaaaacagtgatttctaattgtaggaa---aagattaatggctccccc 358
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct: 502 ccaactcccaatgaaaacagtgatttctaattgtaggaaaagaagattaatgactccctc 561
Query: 359 atccatggcaaagcctgagggtttgtcctgctgcagcccacatgactttactttctttga 418
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 562 atccatggcaaagcttgagggtttgtcctgctgcagcccacatgactttcctttctttga 621
Query: 419 ctgggaagatgcagatgaatgttgagagataaaggagtcagaattctaggcttcatcctt 478
||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 622 ctgagaagatgcagacgaatgttgagagataaaggagtcagaattctaggctttatcctt 681
Query: 479 attctgtgtttttacctctggttgtgtttccccaccaaccaagtatttagatgctgagtg 538
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 682 attctgtgtttttgcctctggttgtgtttccccaccaaccaagtattgagatgctgagtg 741
Query: 539 tatggttaggcaagggtttatgtaggttggcgattcttggaatcaaagtgccataaaggg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tatggttaggcaagggtttatgtaggttggcgattcttggaatcaaagtgccataaaggg 801
Query: 599 aagaaat 605
|||||||
Sbjct: 802 aagaaat 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1008
Length adjustment: 10
Effective length of query: 595
Effective length of database: 998
Effective search space: 593810
Effective search space used: 593810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_e14.g1 MSMg01no451_e14.g1 CHROMAT_FILE:
MSMg01no451_e14.g1 PHD_FILE: MSMg01no451_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:29 2005
(633 letters)
>mm_chr5_4699216_4700250
Length = 1035
Score = 955 bits (494), Expect = 0.0
Identities = 532/558 (95%), Gaps = 24/558 (4%)
Strand = Plus / Minus
Query: 98 ctgcatcctaaccaacatgtggttttatgacattttagtctttgtaatatgagaggaaga 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 ctgcatcctaaccaacatgtggttttatgacattttagtctttgtaatatgagaggaaga 976
Query: 158 tatagatttcattgttttaagatgtgaatataatatatatgtatatatatgagacctatt 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tatagatttcattgttttaagatgtgaatataatatatatgtatatatatgagacctatt 916
Query: 218 ccttttgtttg--------tatatatatatatgta------------tatatatatatat 257
||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 915 ccttttgtttgtatatatatatatatatatatgtatatatatatatgtatatatatatat 856
Query: 258 atacatatataaatatatatattcctttaggacatgctcagacatacttcttaattg--t 315
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 855 atacatatataa--atatatattcctttaggacatgctcagacatacttcttaattgttt 798
Query: 316 ttttttttcctgctgagtagttcttgtttttccaggtcatgtgtcgttttatagattaaa 375
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 797 ttttttttcctgctgagtagttcttgtttttccaggtcatgtgtcgtcttatagattaaa 738
Query: 376 tgtatcagcatattacttgccatatacccattattcacccctaatattctcattttaaaa 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgtatcagcatattacttgccatatacccattattcacccctaatattctcattttaaaa 678
Query: 436 attttggaatgagtaaatatctcagaatggaggtaaacagagtccaggggttgggctctg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 attttggaatgagtaaatatctcagaatggaggtaaacagagtccaggggttgggctctg 618
Query: 496 cagaaagttagtggattctaaatgaactgtggggtagctatagaaagtagaacttccaca 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagaaagttagtggattctaaatgaactgtggggtagctatagaaagtagaacttccaca 558
Query: 556 ctgatgctggggccagggaagagttttgcaaagcatctgtgattaacagtgtttgctatt 615
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 557 ctgatgctggggccagggaagagttttgcaaagcatctgcgattaacagtgtttgctatt 498
Query: 616 tttgtgaaggactgagag 633
||||||||||||||||||
Sbjct: 497 tttgtgaaggactgagag 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1035
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1025
Effective search space: 638575
Effective search space used: 638575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
