Query= MSMg01no451_f11.b1 MSMg01no451_f11.b1 CHROMAT_FILE:
MSMg01no451_f11.b1 PHD_FILE: MSMg01no451_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:33 2005
(623 letters)
>mm_chr5_81510076_81511098
Length = 1023
Score = 1197 bits (619), Expect = 0.0
Identities = 622/623 (99%)
Strand = Plus / Plus
Query: 1 tggtatttttattaaatccatattctaaacttgatcatggacacattctccctcttgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtatttttattaaatccatattctaaacttgatcatggacacattctccctcttgtga 260
Query: 61 ctaatgttcttttagttcatgatagatccagatgtcaagatactgatatcattccatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaatgttcttttagttcatgatagatccagatgtcaagatactgatatcattccatcac 320
Query: 121 ttacctctataagacaaaaatcctgttgtttccaacattcagaaaaaacggaagaaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacctctataagacaaaaatcctgttgtttccaacattcagaaaaaacggaagaaaatg 380
Query: 181 aatacatacaatagcttgagtatttatgatttttaactagtgctgtgtttcattgggtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacatacaatagcttgagtatttatgatttttaactagtgctgtgtttcattgggtgt 440
Query: 241 tttaaaccatcttttggtaacctttgtatatttggtatagacagataggctattaagatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaaccatcttttggtaacctttgtatatttggtatagacagataggctattaagatc 500
Query: 301 atgaaacagatatttatttaaaaatgattatgattttcaagacaatacacattaaaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaaacagatatttatttaaaaatgattatgattttcaagacaatacacattaaaaaga 560
Query: 361 tagtatgctatgtgggtggcacttttgggagaacaaaggcctaatattaaagttgaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtatgctatgtgggtggcacttttgggagaacaaaggcctaatattaaagttgaattt 620
Query: 421 cccccaaatttcagtatatcttttaaccctgaagtaaaagtcaataaaaacggtaatgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccccaaatttcagtatatcttttaaccctgaagtaaaagtcaataaaaacggtaatgtt 680
Query: 481 attatattataattactctatatgaaccttaaaatgtacattattttatccatttctcca 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 attatattataattactctatatgaaccttaaaatgtacattattttatccatttcccca 740
Query: 541 aactgtaaaccatagattaattagtctttgtattgtattaatacagctaattacacatct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aactgtaaaccatagattaattagtctttgtattgtattaatacagctaattacacatct 800
Query: 601 tctatcagttgggtttatcttca 623
|||||||||||||||||||||||
Sbjct: 801 tctatcagttgggtttatcttca 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_f11.g1 MSMg01no451_f11.g1 CHROMAT_FILE:
MSMg01no451_f11.g1 PHD_FILE: MSMg01no451_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:33 2005
(642 letters)
>mm_chr5_81672589_81673631
Length = 1043
Score = 1197 bits (619), Expect = 0.0
Identities = 637/643 (99%), Gaps = 1/643 (0%)
Strand = Plus / Minus
Query: 1 ttagtgtctacagttgagtttttaacactatgcactaacagcacaggtgttatagcctct 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ttagtgtctacagttgagtttctaacactatgcactaacagcacaggtgttatagcctct 784
Query: 61 ttcagacctggacaaacagccacaaacaaaacagtaactgctttgttggtgcctttggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 783 ttcagacctggacaaacagccacaaacaaaacagtaactgctttgttggtgcctttgaat 724
Query: 121 gaatagagtagcttatgtcagtaacaactatatgaatgaaaacactagaaaaatatttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaatagagtagcttatgtcagtaacaactatatgaatgaaaacactagaaaaatatttat 664
Query: 181 aaagctgggctaaattagctggaaagtcaaagattgaatgagtattttgaccatttatct 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaaggtgggctaaattagctggaaagtcaaagattgaatgagtattttgaccatttatct 604
Query: 241 acgatgaaacaccatgccctcttatgaatgctattcagttttctgactgctaaatcttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acgatgaaacaccatgccctcttatgaatgctattcagttttctgactgctaaatcttgc 544
Query: 301 agataaatagtaggtagattaaaaggatctgtattaccaagctgcattgactcataagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agataaatagtaggtagattaaaaggatctgtattaccaagctgcattgactcataagaa 484
Query: 361 cttatcatgcttattggactagttactgattctcttctaaccattagctatttgaaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cttatcatgcttattggactagttactgattctcttctaaccattagctatttgaaaaca 424
Query: 421 taggccatttttggtggaatctattattcacatgggaatcctgatttatttagaaatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taggccatttttggtggaatctattattcacatgggaatcctgatttatttagaaatgca 364
Query: 481 tgattaggaaatatttatttttctgggatgaatctcaagaaaacaaacatttcacatgaa 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 363 tgattaggaaatatttatttttctgagatgaatctcaagaaaacaaacatttcacatgaa 304
Query: 541 tcagggatgagagaagtatgctaaaacgtgacagtaagttacaatttattttt-gctgct 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 303 tcagggatgagagaagtatgctaaaacgtgacagtaagttacaattttttttttgctgct 244
Query: 600 gatactatgcttagacctcttgctattcacacgcatctcattt 642
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gatactatgcttagacctcttgctattcacacgcatctcattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space: 652856
Effective search space used: 652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
