BAC Information

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BAC

Clone NameMSMg01-451J08
Chromosome5 (Build37)
Map Location 99,311,559 - 99,311,909
singlet/doubletsinglet
Overlap genenone
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
Downstream genePrkg2, LOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451J08.T7 (MSMg01no451_j08.b1)MSMg01-451J08.TJ (MSMg01no451_j08.g1)
ACCAG539038AG539039
length753731
length of high quality
(start - end)		604 (52 - 655)585 (81 - 665)
definitionCHROMAT_FILE: MSMg01no451_j08.b1 PHD_FILE: MSMg01no451_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:53 2005CHROMAT_FILE: MSMg01no451_j08.g1 PHD_FILE: MSMg01no451_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTAGGAATCAGTTATCAGAAATAGAATGTATAGATTTGAG
CCAGATGGGGGTCCCAGCGCTACAAACAGGAAGTAGACAAGGGTCCACTC
CCAATGAAGAGCCTGTCTGCAATTGATACCCACTTGCAAAGGAAAAAAAA
TTAGTTTTCTCCAATGGAGTGTCACTGGGTATATTAATCACACTTAATGG
TAAGCCCTATGCCCAGGAATAAATGGTCAAAATAAACCAACTCAGTGATA
TTCTTGTAGGCTTTTTAAAAAAAGAATTATTTTCTTAAAATGTCTGTCTG
TCTGTCTGTCTGTCTCTGCCTCAGTTGCTGCTTCTGTCTTATTCTATCTG
TCTTTCTGTCTCTCACTTTGTCTGTCTGTCTCTCTCTGAGTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTG
TGGTGTAAGAATGGCTAGGACACAGTTTGAGAATAGAAAAAGAATGATGT
TGAGAAGGGAGAAAGTGATGGGAATAGAGATAGGGCATGCAGGTTTTATT
TAGAAAATAGCATTTCAAAACGTAGTGCTTTTTCCCATCAACCCCAAAAT
CATAGGAGAGTTGTCAAAATCTTGTATGGAAATGTGTACCTAACACATTG
CAGACGAGGCGCTTATTAATATTGCACTTAAGTAAAGTCTATTGATTAAA
ACA

NNNCCCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTT
ATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGA
GATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACAT
TGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCT
ACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGC
GAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTC
TGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTA
ATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTT
GTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGAT
AGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGA
CTATTAATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAG
GTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATT
TGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAAGCTTTTGTAG
AAGGATCTGATGGTGTTTTGGATTTCTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_j08.b1 MSMg01no451_j08.b1 CHROMAT_FILE:
MSMg01no451_j08.b1 PHD_FILE: MSMg01no451_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:53 2005
         (604 letters)



>mm_chr5_99310907_99311909
          Length = 1003

 Score =  505 bits (261), Expect = e-147
 Identities = 331/365 (90%), Gaps = 21/365 (5%)
 Strand = Plus / Minus

                                                                        
Query: 247  atattcttgtaggctttttaaaaaaagaattattttcttaaaa----tgtctgtctgtct 302
            ||||||||||||||||||| |||||||||||||||||||||||    |||||||||||||
Sbjct: 1003 atattcttgtaggcttttttaaaaaagaattattttcttaaaatgtctgtctgtctgtct 944

                                                                        
Query: 303  gtctgtctgtctctgcctcagttgctgcttctgtcttattctatctgtctttctgtctct 362
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  gtctgtctgtctctgtctcagttgctgcttctgtcttattctatctgtctttctgtctct 884

                                                                        
Query: 363  cactttgtctgtctgtctctctctgagtctctctct---ctctctctctctctctctctc 419
            ||||||||||||||||||        ||||||||||        ||||| ||| | | | 
Sbjct: 883  cactttgtctgtctgtct--------gtctctctctgag-----tctctgtctgtgtgtg 837

                                                                        
Query: 420  tctctctctgtgtgtgtgtgtgtgtgtgtgtggtgtaagaatggctaggacacagtttga 479
            | | | | |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 836  tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtaagaatggctaggacacagtttga 777

                                                                        
Query: 480  gaatagaaaaagaatgatgttgagaagggagaaagtgatgggaatagagatagggcatgc 539
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 776  gaatagaaaaagaat-atgttgagaagggagaaagtgatgggaatagagatagggcatac 718

                                                                        
Query: 540  aggttttatttagaaaatagcatttcaaaacgtagtgctttttcccatcaaccccaaaat 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  aggttttatttagaaaatagcatttcaaaacgtagtgctttttcccatcaaccccaaaat 658

                 
Query: 600  catag 604
            |||||
Sbjct: 657  catag 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space:   589842
Effective search space used:   589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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