NGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTTCAGCTGTGGGTCTGTCTACTTTTATCATGTGTGTCTA
AGAAGTATAATTCAGTCATCTATAGCTTCCTGAATAACATTCTTTTGGAT
ACTACTTTTAAACATATCTAAAGTACTGTAGACGAAGGGGCTCACATGTG
CTATGATGGTACCTACATTCTAAGTATATATTGCTTACCATCTTTCTAGT
GTACAGACATTTGTTTTCTTGGTTTGTCTTCAAATGGCTGGGAGAGAAAC
ATGCCCCCTTACATCTTTTTATTCAAGGTCCTTAATTCTACTGATGAGGG
TTCAACTTTCATAACTTTGGTGATGACCAATGGTCTCACAAATATTACAA
AGGGAATTAGAACTTATTATAAGAACTGGGAAAAGGAATAGCAGACAATT
CATTCTTGTAAGGACATATACAGTCCATGAGCTTTTCACACGCAAAATGC
ATTTGCTCTATTCAGAAGTCCTAAAAAACTTAACTCAGTTAAGTATCAAC
TATAAAGCAAGACATTCAATGTCTTTGTCTAACTATCATCTGAATTAGAT
GTGAATAAGATTCAAGATATAACACTAGCAAGATTTTGCTGAAAGGACCC
TGATATAGCTGTCTCTAGTGAGACTACACTGGGGCCTAGCAAACACATAA
GTGGATGCTCACAGTCAGCTAGTGGATGGGTCACA

TTTGCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCA
TAGGATCCAGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCTATCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACAAAATGGAGTACTACACAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTAC
AATTTGCTAAACACTTGAAACTCAAGAAGAATGAAGACTGAAGTGT

Query= MSMg01no452_c05.b1 MSMg01no452_c05.b1 CHROMAT_FILE:
MSMg01no452_c05.b1 PHD_FILE: MSMg01no452_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:37 2005
         (686 letters)



>mm_chr5_41573339_41574424
          Length = 1086

 Score = 1218 bits (630), Expect = 0.0
 Identities = 669/682 (98%), Gaps = 1/682 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttcagctgtgggtctgtctacttttatcatgtgtgtctaagaagtataattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttcagctgtgggtctgtctacttttatcatgtgtgtctaagaagtataattc 264

                                                                       
Query: 65  agtcatctatagcttcctgaataacattcttttggatactacttttaaacatatctaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtcatctatagcttcctgaataacattcttttggatactacttttaaacatatctaaag 324

                                                                       
Query: 125 tactgtagacgaaggggctcacatgtgctatgatggtacctacattctaagtatatattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactgtagacgaaggggctcacatgtgctatgatggtacctacattctaagtatatattg 384

                                                                       
Query: 185 cttaccatctttctagtgtacagacatttgttttcttggtttgtcttcaaatggctggga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttaccatctttctagtgtacagacatttgttttcttggtttgtcttcaaatggctggga 444

                                                                       
Query: 245 gagaaacatgcccccttacatctttttattcaaggtccttaattctactgatgagggttc 304
            |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagaaacatgtgcccttacatctttttattcaaggtccttaattctactgatgagggttc 504

                                                                       
Query: 305 aactttcataactttggtgatgaccaatggtctcacaaatattacaaagggaattagaac 364
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aactttcgtaacattggtgatgaccaatggtctcacaaatattacaaagggaattagaac 564

                                                                       
Query: 365 ttattataagaactgggaaaaggaatagcagacaattcattcttgtaaggacatatacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttattataagaactgggaaaaggaatagcagacaattcattcttgtaaggacatatacag 624

                                                                       
Query: 425 tccatgagcttttcacacgcaaaatgcatttgctctattcagaagtcctaaaaaacttaa 484
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccatgagcttttcaaatgcaaaatgcatttgctctattcagaagtcctaaaaaacttaa 684

                                                                       
Query: 485 ctcagttaagtatcaactataaagcaagacattcaatgtctttgtctaactatcatctga 544
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 685 ctcagttaagtatcaactataaagcaagacattcaatgt-tttgtctaactatcatctaa 743

                                                                       
Query: 545 attagatgtgaataagattcaagatataacactagcaagattttgctgaaaggaccctga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attagatgtgaataagattcaagatataacactagcaagattttgctgaaaggaccctga 803

                                                                       
Query: 605 tatagctgtctctagtgagactacactggggcctagcaaacacataagtggatgctcaca 664
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 804 tatagctgtctctagtgagactataccggggcctagcaaacacataagtggatgctcaca 863

                                 
Query: 665 gtcagctagtggatgggtcaca 686
           |||||||| ||||||| |||||
Sbjct: 864 gtcagctattggatggatcaca 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)