Query= MSMg01no452_d15.b1 MSMg01no452_d15.b1 CHROMAT_FILE:
MSMg01no452_d15.b1 PHD_FILE: MSMg01no452_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:43 2005
(674 letters)
>mm_chr5_116305688_116306761
Length = 1074
Score = 1232 bits (637), Expect = 0.0
Identities = 670/693 (96%), Gaps = 22/693 (3%)
Strand = Plus / Plus
Query: 1 agaccgcgcaggagtgacaagcatttgcttctattagagaggacctgggtttgcttccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agaccgcgcaggagtgacaagcatttgcttctattagagaggacctgggtttgcttccca 244
Query: 61 acttctcacgacagcttgtaacttctgtaactccagttaaggggacctggtacactcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acttctcacgacagcttgtaacttctgtaactccagttaaggggacctggtacactcttg 304
Query: 121 tataaaacacatgcttatgtaatttatataataccttaaattttaagtgacacacacata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 305 tataaaacacatgcttatgtaatttatataataccttaaattttaagtgacacacatata 364
Query: 181 tgtgtacatatatgtatatatgagagatactgtggtatttcaacacctgattatctatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgtgtacatatatgtatatatgagagatactgtggtatttcaacacctgattatctatct 424
Query: 241 atctaattcatttatttattaaagagttatttttctgggtgtggtggcacatgtctcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atctaattcatttatttattaaagagttatttttctgggtgtggtggcacatgtctcaaa 484
Query: 301 aaaaaaa---caacccaaacaaaaccaaaacacactgtttatttttaaaatatttattta 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaaaaaaaacaacccaaacaaaaccaaaacacactgtttatttttaaaatatttattta 544
Query: 358 tttatttattt--------------ttgtaattttttt--aaaaaagatttatttattga 401
||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 545 tttatttatttatttatttatttttttgtaatttttttttaaa---gatttatttattga 601
Query: 402 ttataggtaagtacactatagctgtcttcagacactccagaagagggagtcagatctctt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttataggtaagtacactatagctgtcttcagacactccagaagagggagtcagatctctt 661
Query: 462 tacggatggttgtaagccaccatgtggttgctgggatttgaactctggaccttcggaaaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tacggatggttgtaagccaccatgtggttgctgggatttgaactctggaccttcggaaaa 721
Query: 522 gcagtcgggtgctcttacccactgagccatcttaccagccctttaaaatatttataaagc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gcagtcgggtgctcttacccactgagccatcttaccagccctttaaaatatttataaagc 781
Query: 582 atgtgacatgtttgccacttattttgtttctttagtttttaaaggatttgatatgtacat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atgtgacatgtttgccacttattttgtttctttagtttttaaaggatttgatatgtacat 841
Query: 642 ttgtgttatcggtatctgtatgtgcactgcaca 674
|||||||||||||||||||||||||||||||||
Sbjct: 842 ttgtgttatcggtatctgtatgtgcactgcaca 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_d15.g1 MSMg01no452_d15.g1 CHROMAT_FILE:
MSMg01no452_d15.g1 PHD_FILE: MSMg01no452_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:44 2005
(539 letters)
>mm_chr5_116445001_116445939
Length = 939
Score = 992 bits (513), Expect = 0.0
Identities = 534/545 (97%), Gaps = 10/545 (1%)
Strand = Plus / Minus
Query: 1 tgcccatgccacttaagtccattagaaggcaccactaccagaccaaagccaaggactcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgcccatgccacttaagtccattagaaggcaccactaccagaccaaagccaaggactcca 555
Query: 61 catgattccttcccaggacacaagctttggagatcaggcgacccccctgcccccaccccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 catgattccttcccaggacacaagctttggagatcaggcgacccccctgcccccaccccg 495
Query: 121 tacctcacataccgaaggccagaggtaagcgactccacttgagatcatctgtgcggctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tacctcacataccgaaggccagaggtaagcgactccacttgagatcatctgtgcggctac 435
Query: 181 gtcttccgtaagaatccacgaacaccccaaattctgtaaggcgccaagggcatggggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtcttccgtaagaatccacgaacaccccaaattctgtaaggcgccaagggcatggggaca 375
Query: 241 ttagccacgtgtgctttgatgggagaacaaggaccaaagcccatgggcaactgactggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttagccacgtgtgctttgatgggagaacaaggaccaaagcccatgggcaactgactggct 315
Query: 301 ctaaccggactggcaaagccagacgaccaccacagaaccatcttcagtttaaattgaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctaaccggactggcaaagccagacgaccaccacagaaccatcttcagtttaaattgaaag 255
Query: 361 tttcctaagtgaagttttctgagtaatccgttttcctcaagaaagaaagttgaccaanna 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 254 tttcctaagtgaagttttctgagtaatccgttttcctcaagaaagaaagttgac-aa--- 199
Query: 421 aaaaaaaaaaaaaaaaaaaaagaaaagaaaaac---caaaaaaaaaa---gccgggcgcg 474
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 198 aaaaaaaaaaaaaaaaaaaaagaaaagaaaaacaaacaaaaaaaaaaaaagccgggcgcg 139
Query: 475 gtggcgcacgcctttaaccccagcactcgggaggcagaggcaggcggatttctgagtttg 534
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gtggcacacgcctttaaccccagcactcgggaggcagaggcaggcggatttctgagtttg 79
Query: 535 aggcc 539
|||||
Sbjct: 78 aggcc 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
