BAC Information

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BAC

Clone NameMSMg01-452F17
Chromosome5 (Build37)
Map Location 15,620,431 - 15,696,470
singlet/doubletdoublet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F17.T7 (MSMg01no452_f17.b1)MSMg01-452F17.TJ (MSMg01no452_f17.g1)
ACCAG539628AG539629
length784780
length of high quality
(start - end)		490 (47 - 536)619 (77 - 695)
definitionCHROMAT_FILE: MSMg01no452_f17.b1 PHD_FILE: MSMg01no452_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:53 2005CHROMAT_FILE: MSMg01no452_f17.g1 PHD_FILE: MSMg01no452_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,620,431 - 15,620,912)(15,695,852 - 15,696,470)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTATTATGCTTATTAATTTTTAACTATGTACTGTTTTCTCCAA
CAAACTAACTTTTAAAAGAGGAAATGAATTATTTTTGATCAGGTGAACAT
ATCTCAAGGCATGAAATTATTCTTGCTTGAAGAATGAAACAATGTTCTTT
AAAATGAGGTTTTATGTAGAAATCACTTTAAGATATTTTAAAATTAATTT
TTTCCTTTAAAATACATTCTGTGAAGTGCTTCTTTATAATTAGTTCAAAT
CACAAAAGAAAGTTACTTCTAAATGTTCTATTCATTGCTTTATGTTTTAA
GTACTAAGAAATTATCTGCCTGCTTTAAATTTTAATATACTTGTTTTGAA
ACATCTGTGTAATCAAGTCATTAGTTGTGTGTGTGGGTTGATGGGTGTGA
GAGAGAGATTATGATTGTGTCTGTATATGTATGTTTGGATCTCAGTGTAT
GTTATGTGTGATTGTGTATGTGTGTATGGATGNGNGNGNNNGNNNNNGGN
NNNNTGTNTGNTTGTNTGAATTTTGTGTGTGTGGNGTGTTTTGTTTGGGT
GTGNTGTTTGTGGNTNNNTTGTTTTGNGTTTTTTTNNTTTTNNNGGTGNT
GNTTTTTTTTNTTGTTNNNGGGTGTNGTTGGTTTTTGGTTTTGTTGGTTT
TTGTTTTGTGTTTTTTTTTTGTTTGTTTTGGTTTNTTNTNTTTTGGGTTT
TTTTTTTTNTNTNGTGTGNTGGTTTTTGTTTTTG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCACCATATATCTGAAAGAC
TTTGCAAAATTTAGGGAAATATGTAGGCTTATCATTATGCAGAATTCAAA
TTATTTTGATGTTTTATAAAATTAGAATGTACGTCTTCAGTTTAAGTATT
CAAACTGTATTTATTTAAACAACATAAAATAAAAAGTTAAAACGTCAAAT
AAAAATGTTCTAACATTAAAATGGCACTTACTTTGCTTAACATAAATTAT
GAAAAGCAGTTTTTAAATAAGAAATTGTGATTTAAAAAAAGAACGCGTTA
CTCAGCTAAGGGCATGCATAAAGATTGTTTACTCTAGATTCATGCCATTT
GAAGGATATGCAAAATATTGCAGAGATATGGGGCTAATTAGAGTCTTCTA
CATTTTAAACTATCATTCCACAAATGTTTAGAACAAAGGAACACATCAAT
GTATTCAGTTTGATCATATTTTTCTTTTTACTGCATAAGAAACTCAGTGT
GAAAAATATTTTACATTTAAGAGATCAAACGATTTGCAAGTCAGTCTCCA
GGTGTGAAGAGTGAGGAGAAGGTGTTAGCAGCCAATTAACCTTTACAGAG
CCCGCCCCTTCCCACTCAGCCAGAAGGCAGCAGTTCCTCCTCCTGATGCT
CAAGATTTGGGCTACTTTCATGATTCCTTGTCAAACTCAAATATCGGATC
CTAAGCCCTCCAGAGATAACGCGTAGTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f17.b1 MSMg01no452_f17.b1 CHROMAT_FILE:
MSMg01no452_f17.b1 PHD_FILE: MSMg01no452_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:53 2005
         (490 letters)



>mm_chr5_15620227_15621116
          Length = 890

 Score =  909 bits (470), Expect = 0.0
 Identities = 479/482 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattattatgcttattaatttttaactatgtactgttttctccaacaaactaact 64
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcattattatgtttattaatttttaactatgtactattttctccaacaaactaact 264

                                                                       
Query: 65  tttaaaagaggaaatgaattatttttgatcaggtgaacatatctcaaggcatgaaattat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaaagaggaaatgaattatttttgatcaggtgaacatatctcaaggcatgaaattat 324

                                                                       
Query: 125 tcttgcttgaagaatgaaacaatgttctttaaaatgaggttttatgtagaaatcacttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttgcttgaagaatgaaacaatgttctttaaaatgaggttttatgtagaaatcacttta 384

                                                                       
Query: 185 agatattttaaaattaattttttcctttaaaatacattctgtgaagtgcttctttataat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatattttaaaattaattttttcctttaaaatacattctgtgaagtgcttctttataat 444

                                                                       
Query: 245 tagttcaaatcacaaaagaaagttacttctaaatgttctattcattgctttatgttttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagttcaaatcacaaaagaaagttacttctaaatgttctattcattgctttatgttttaa 504

                                                                       
Query: 305 gtactaagaaattatctgcctgctttaaattttaatatacttgttttgaaacatctgtgt 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 gtactaagaaattatctgcctgctttaaattttaatacacttgttttgaaacatctgtgt 564

                                                                       
Query: 365 aatcaagtcattagttgtgtgtgtgggttgatgggtgtgagagagagattatgattgtgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatcaagtcattagttgtgtgtgtgggttgatgggtgtgagagagagattatgattgtgt 624

                                                                       
Query: 425 ctgtatatgtatgtttggatctcagtgtatgttatgtgtgattgtgtatgtgtgtatgga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtatatgtatgtttggatctcagtgtatgttatgtgtgattgtgtatgtgtgtatgga 684

             
Query: 485 tg 486
           ||
Sbjct: 685 tg 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_f17.g1 MSMg01no452_f17.g1 CHROMAT_FILE:
MSMg01no452_f17.g1 PHD_FILE: MSMg01no452_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:53 2005
         (619 letters)



>mm_chr5_15695652_15696670
          Length = 1019

 Score = 1181 bits (611), Expect = 0.0
 Identities = 617/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgccaccatatatctgaaagactttgcaaaatttagggaaatatgtaggcttatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 aatgccaccatatatctgaaagactttgcaaaatttagggaaatatgtaggcttatcatt 760

                                                                       
Query: 61  atgcagaattcaaattattttgatgttttataaaattagaatgtacgtcttcagtttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atgcagaattcaaattattttgatgttttataaaattagaatgtacgtcttcagtttaag 700

                                                                       
Query: 121 tattcaaactgtatttatttaaacaacataaaataaaaagttaaaacgtcaaataaaaat 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 699 tattcaaactgtatttatttaaacaacataaaataaaaagttaaaatgtcaaataaaaat 640

                                                                       
Query: 181 gttctaacattaaaatggcacttactttgcttaacataaattatgaaaagcagtttttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gttctaacattaaaatggcacttactttgcttaacataaattatgaaaagcagtttttaa 580

                                                                       
Query: 241 ataagaaattgtgatttaaaaaaagaacgcgttactcagctaagggcatgcataaagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 579 ataagaaattgtgatttaaaaaaagaacgcgttactcagctaagggcatgcctaaagatt 520

                                                                       
Query: 301 gtttactctagattcatgccatttgaaggatatgcaaaatattgcagagatatggggcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gtttactctagattcatgccatttgaaggatatgcaaaatattgcagagatatggggcta 460

                                                                       
Query: 361 attagagtcttctacattttaaactatcattccacaaatgtttagaacaaaggaacacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 attagagtcttctacattttaaactatcattccacaaatgtttagaacaaaggaacacat 400

                                                                       
Query: 421 caatgtattcagtttgatcatatttttctttttactgcataagaaactcagtgtgaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caatgtattcagtttgatcatatttttctttttactgcataagaaactcagtgtgaaaaa 340

                                                                       
Query: 481 tattttacatttaagagatcaaacgatttgcaagtcagtctccaggtgtgaagagtgagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tattttacatttaagagatcaaacgatttgcaagtcagtctccaggtgtgaagagtgagg 280

                                                                       
Query: 541 agaaggtgttagcagccaattaacctttacagagcccgccccttcccactcagccagaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agaaggtgttagcagccaattaacctttacagagcccgccccttcccactcagccagaag 220

                              
Query: 601 gcagcagttcctcctcctg 619
           |||||||||||||||||||
Sbjct: 219 gcagcagttcctcctcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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