Query= MSMg01no452_g21.b1 MSMg01no452_g21.b1 CHROMAT_FILE:
MSMg01no452_g21.b1 PHD_FILE: MSMg01no452_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:59 2005
(673 letters)
>mm_chr5_114377799_114378870
Length = 1072
Score = 1180 bits (610), Expect = 0.0
Identities = 654/678 (96%), Gaps = 18/678 (2%)
Strand = Plus / Plus
Query: 4 ggaattctcacagtttgctcacacagaaaggccatcttggcagagtttagaggaggtcct 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcacagggtgctcacacagaaaggccatcttggcagagtttagaggaggtcct 263
Query: 64 tccagacatggcttattggaggaggcagttctgtgattctgtctagcctctagctgggct 123
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 264 tccagacatggcttattggaggaggcagttctgtgattctgtct-gcctctagttggtct 322
Query: 124 acctgtgtaagtcatttgtattctaagcatcccctgaaggggtgacccacattgtccagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acctgtgtaagtcatttgtattctaagcatcccctgaaggggtgacccacattgtccagt 382
Query: 184 gtgactaaagaaacgtcatccttaactaaagatcccagccaagcccccatcacagctgca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtgactaaagaaacgtcatccttaactaaagatcccagccaagcccccatcacagctgca 442
Query: 244 gctatagaaagtgggcttgtctcaaaaaaaaaaaacaaaaaaaaagaaagaaagaaagaa 303
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 443 gctatagaaagtgggcttgtctcaaaaaaa-----caaaaaaaaagtaagaaagaaagaa 497
Query: 304 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaagaaagaaagtg 363
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 498 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa----agaaagaaagtg 553
Query: 364 ggcttgagaacagggtgatcatcacactgtcctagtcagggttactatcaacgtcataaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggcttgagaacagggtgatcatcacactgtcctagtcagggttactatcaacgtcataaa 613
Query: 424 caccaccaatgcaagatgggggaggagagggcttac--------ttggcttatgctgcct 475
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 614 caccaccaatgcaagatgggggaggagagggcttacgggcttacttggcttatgctgcct 673
Query: 476 catcatagtccatcactgaagaaaagtcaggacaggaactcaagcagagcaggaacctgg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 catcatagtccatcactgaagaaaagtcaggacaggaactcaagcagagcaggaacctgg 733
Query: 536 aggcaggagctgatgcagaggccatggagggtgctgcttactggcttgttcccatgcttc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aggcaggagctgatgcagaggccatggagggtgctgcttactggcttgttcccatgcttc 793
Query: 596 tcatcctgctttcttagagaacccaggaccaccagcccagggatggccccgcccataacg 655
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 794 tcatcctgctttcttagagaacccaggaccaccagcctagggatggccccgcccataacg 853
Query: 656 ggctggccccatccataa 673
||||||||||||||||||
Sbjct: 854 ggctggccccatccataa 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space: 704106
Effective search space used: 704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_g21.g1 MSMg01no452_g21.g1 CHROMAT_FILE:
MSMg01no452_g21.g1 PHD_FILE: MSMg01no452_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:59 2005
(590 letters)
>mm_chr5_114548877_114549866
Length = 990
Score = 996 bits (515), Expect = 0.0
Identities = 518/519 (99%)
Strand = Plus / Minus
Query: 1 actctttaaaacagcaaaacatggaaacaaactagatatttatcagctgcaaatctccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 actctttaaaacagcaaaacatggaaacaaactagatatttatcagctgcaaatctccct 462
Query: 61 ctgtcatacatacaataaaaaaggtgttagaatttttagattcctctcttgtgtgggcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ctgtcatacatacaataaaaaaggtgttagaatttttagattcctctcttgtgtgggcat 402
Query: 121 gctgctgtatgtgctgcagatctttataccatttctcttctcaaagccgaactgtgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gctgctgtatgtgctgcagatctttataccatttctcttctcaaagccgaactgtgtgtg 342
Query: 181 ttgagtaactcccccttcctgtcttctgttctagtaatttccattctatttctattcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttgagtaactcccccttcctgtcttctgttctagtaatttccattctatttctattcctg 282
Query: 241 tgaggttgaggttggctgtctcaggacaggagtcgctcagagttctttggtgactgtctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgaggttgaggttggctgtctcaggacaggagtcgctcagagttctttggtgactgtctt 222
Query: 301 agctcacttggcataaagtctttttttacaggaaagtaatattccattgtaagtactagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agctcacttggcataaagtctttttttacaggaaagtaatattccattgtaagtactagt 162
Query: 361 ttctctctcctgtccatgtctcaatggacattcaggttgtttccacttcttggcaataaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttctctctcctgtccatgtctcaatggacattcaggttgtttccacttcttggcaataaa 102
Query: 421 ctcgggcacataaccctctctttctggtcttgttttcagcccttccagatatatatcaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ctcgggcacataaccctctctttctggtcttgttttcagcccttccagatatatatcaag 42
Query: 481 taatgagattataaatttatatgctaattcttttttttt 519
||||||||||||| |||||||||||||||||||||||||
Sbjct: 41 taatgagattatagatttatatgctaattcttttttttt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
