BAC Information

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BAC

Clone NameMSMg01-452L14
Chromosome5 (Build37)
Map Location 60,284,133 - 60,284,357
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452L14.T7 (MSMg01no452_l14.b1)MSMg01-452L14.TJ (MSMg01no452_l14.g1)
ACCAG539908AG539909
length748752
length of high quality
(start - end)		619 (71 - 689)261 (83 - 343)
definitionCHROMAT_FILE: MSMg01no452_l14.b1 PHD_FILE: MSMg01no452_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:22 2005CHROMAT_FILE: MSMg01no452_l14.g1 PHD_FILE: MSMg01no452_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGACTGGCTGAGAAGCACCTGAAAAAATGTTAGA
CATCCTTAATCATCAGGGAAATGCAAACTAAAATAACCTTGAGATTCCAT
TAAACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAA
TTGGACATAGTACTACCAGAGGATCCCGCAATACCTATCCTGGGCCTATA
TCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGGTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTTGGCAAATAGA
TGGACCCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAA
CTTGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAG
CATACCCAAGATATAAGATACAATTTGCTAAACGCATGANACTCAAGAAG
AAAGAAGACCAAAGTATGGACACTTTGCCCCTTCTTGGAATTGGGAAN

TTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGTAATGCACACAGA
TGCACACACAGGGGGTTCATGGGGAGAATATGAAACTCTACTTTTATTAT
CATATAAGGATATCAGGCTTATAATAAAAGCTCTAGCATCAAGATTCCAT
ATTAACTAAACTGACTCCCAAATGTCCTATTTTTTAAGATATTCCGCTAT
TGAGTCAGAGTTTCAATATATTGATTTTGTGAGGAGCATATATATATATA
TATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TNNNTGTTTTTTTTTGTTTTNNTCTTTTTTTTTTTTTTNTTTTTNTTTTT
TTTTGTTTTTTTTNNTTTTTTTTTTTTTTTTTGTGTTTTTTGGGTTGTTT
TTTNTGGTGTTTTGGTGTGGTTTTTTTTGTTTTGTTTTTTTTTGTTTTTG
TTTGTGTGGTGGTGGGGGTTTTTGTTGTTTTTTTGTTTTGGTTTGTTTGT
TGATTATTTTTTGTTGTTTGTGTTNTTGGTTTTGGGGGGTTTGTGTGGGT
GTTCTTTTTTGTGTTTTTTGTTTGTGTGTTTGTTTTTGTTGGTTTGTTGT
TGTTTTCTTTGTTTCTTGGTTTTTGTTTTTGTTGTGTTTGTTTTTTTGTT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_l14.g1 MSMg01no452_l14.g1 CHROMAT_FILE:
MSMg01no452_l14.g1 PHD_FILE: MSMg01no452_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:22 2005
         (261 letters)



>mm_chr5_60283953_60284613
          Length = 661

 Score =  389 bits (201), Expect = e-112
 Identities = 219/225 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgtaatgcacacagatgcacacacagggggttcatggggagaatatgaaactctact 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 405 tcatgtaatgcacacagatgcacacaaagggggttcatggggagaatatgaaactctact 346

                                                                       
Query: 61  tttattatcatataaggatatcaggcttataataaaagctctagcatcaagattccatat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 345 tttattatcatataaggatatcaggcttataataaaagctctagcatcaagactccatat 286

                                                                       
Query: 121 taactaaactgactcccaaatgtcctattttttaagatattccgctattgagtcagagtt 180
           |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 285 taactaaactgactcccaaatgccctattttctaagatattccgctattgagtcagagtt 226

                                                        
Query: 181 tcaatatattgattttgtgaggagcatatatatatatatatatat 225
           |||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 225 tcaacatattgattttgtgaggagcatacatatatatatatatat 181


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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