BAC Information

Click to search

BAC

Clone NameMSMg01-452N07
Chromosome5 (Build37)
Map Location 111,372,130 - 111,554,200
singlet/doubletdoublet
Overlap geneTtc28
Upstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
Downstream genePitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452N07.T7 (MSMg01no452_n07.b1)MSMg01-452N07.TJ (MSMg01no452_n07.g1)
ACCAG539989AG539990
length749756
length of high quality
(start - end)		663 (54 - 716)576 (75 - 650)
definitionCHROMAT_FILE: MSMg01no452_n07.b1 PHD_FILE: MSMg01no452_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:31 2005CHROMAT_FILE: MSMg01no452_n07.g1 PHD_FILE: MSMg01no452_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,372,130 - 111,372,789)(111,553,845 - 111,554,200)
sequence
NCCAAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTACACTGAAGAATTTCACTGCACCAAAGTCTCTTAAG
GTGTTGTAATCAATTTACTCTTAGAGTTGTCTTTATTCGTCTTTGTTTTC
CTGTTGTGAACTGGGTTAGCACGGAGTGTGTCTCACAGAAGCTGGTGCGT
AGACTCATCAATGCTGAGTCTGTTTTACTGCCTCTGCTTTCTGTATAACG
ATCCCTGAGATTTCACGGCTATACCTGAGTGGGTTCTGAAGGACAGAGGG
TTGTTTTCTATAATTTTAGTAGTTACAACCAGAAATGTAATTTCTTTTCA
CGAAATAACTAGAGAATTTTGTTATTGAATCTCTTAAAAAATATATGTAT
ATATGTATGTATGTGTAGGTATATCTCCCATGGTTTGGACTTCTCATTTT
AAAGGTAGAATAACTATATACTTGTTTTATTTCTCTTTTTATACTCATCT
GAAAAAAAATAGGACTTCAGAAAATCTAACTTTTAAATCACTTGTAATGT
TTTTTCCACCCCGCAGACCCAGCAAGAAATCAGTTGGAGAAGAATAAGAT
TATTATCAGTCATCTCCCATGCCAACATTGTATAAAAAATTGTAATCATG
CTTGCGAGGACATGAAGAATTGGCAAGAATACATTTAAAGCCAACTGAAT
GGGAAAAGGTCTGAGAAATACAGGGTGGGAGGGATTGAGGTTAGTTAGG

NCCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTCCGAGGAATTCAGTACTGGGTCGTAGACAGTTGTG
GTTAATGAGTTCAGACCGATTTGTGGGCTCCAGTGGGTCTGGTCCCGTGG
ATCTGATACAGGGAGATATCATGGTTAAACTTTCACTTTGAAACTCTGCT
CTCAGGTCTCAGTGATCAAGAATAGAGAGTGAAGAGGAAGAAGGAAGGAG
AAAAGAGGAAGAGGAAGGAGAAAAACTCAACAGTTGGGAACTAACACTAA
ATGAGTGTAAATGAGAGTGTCTAGTGCAGTGGCTCTCAACCTTCCCAACA
CCTTGACCCTTTAATACAGTCCCTCATGTGCGGTGACGCCCAACCACAAA
ATTATTCCATTGTTACTCACAACTGTAATTTTGCTACTGTTATGAATCAT
AATGTAAATGTCTGACATGCAGGGTATTTGATATGTGACCTCCACGCAAA
GGTCATTTGACACCTTCCTCAGAGGGGGTCATAGGTTGAAAACTGCTGGC
TTAGTGTGTTCAGGAGAGGAGGAGGAGGGTGACCACACAGCTTCTGGGAA
GGAAAAAGAAAAGGATTTAAAAGATAATGGTGGATGGGTGGGTAGATAGG
TTGGATAGGTGGTTNTNNNTTTTTTTNTTGTTTTTGTTGTTTTTTTTTGT
TTTGGTGTTTGTTTTGTTATATTTGTGTTTTCTGTTTTTTAGTGCTTCTT
TTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_n07.b1 MSMg01no452_n07.b1 CHROMAT_FILE:
MSMg01no452_n07.b1 PHD_FILE: MSMg01no452_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:31 2005
         (663 letters)



>mm_chr5_111371926_111372989
          Length = 1064

 Score = 1222 bits (632), Expect = 0.0
 Identities = 653/660 (98%), Gaps = 1/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacactgaagaatttcactgcaccaaagtctcttaaggtgttgtaatcaattta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacactgaagaatttcactgcaccaaagtctcttaaggtgttgtaatcaattta 264

                                                                       
Query: 65  ctcttagagttgtctttattcgtctttgttttcctgttgtgaactgggttagcacggagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcttagagttgtctttattcgtctttgttttcctgttgtgaactgggttagcacggagt 324

                                                                       
Query: 125 gtgtctcacagaagctggtgcgtagactcatcaatgctgagtctgttttactgcctctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtctcacagaagctggtgcgtagactcatcaatgctgagtctgttttactgcctctgc 384

                                                                       
Query: 185 tttctgtataacgatccctgagatttcacggctatacctgagtgggttctgaaggacaga 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tttctgtataacgatccctgagatttcacggttatacctgagtgggttctgaaggacaga 444

                                                                       
Query: 245 gggttgttttctataattttagtagttacaaccagaaatgtaatttcttttcacgaaata 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 445 gggttgttttctataattttagtagttacaaccataaatgtaatttcttttcacgaaatg 504

                                                                       
Query: 305 actagagaattttgttattgaatctcttaaaaaatatatgtatatatgtatgtatgtgta 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 actagagaattttgttattgaatctcttaaaaaatatatgtatatatgtatgcatgtgta 564

                                                                       
Query: 365 ggtatatctcccatggtttggacttctcattttaaaggtagaataactatatacttgttt 424
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtatatctcccatggtgtggacttctcattttaaaggtagaataactatatacttgttt 624

                                                                       
Query: 425 tatttctctttttatactcatctgaaaaaaaa-taggacttcagaaaatctaacttttaa 483
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 tatttctctttttatactcatctgaaaaaaaaataggacttcagaaaatctaacttttaa 684

                                                                       
Query: 484 atcacttgtaatgttttttccaccccgcagacccagcaagaaatcagttggagaagaata 543
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 685 atcacttgtaatgttttttccaccccacagacccagcaagaaatcagttggagaagaata 744

                                                                       
Query: 544 agattattatcagtcatctcccatgccaacattgtataaaaaattgtaatcatgcttgcg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agattattatcagtcatctcccatgccaacattgtataaaaaattgtaatcatgcttgcg 804

                                                                       
Query: 604 aggacatgaagaattggcaagaatacatttaaagccaactgaatgggaaaaggtctgaga 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggacatgaagaattggcaagaatacatttaaagccaactgaatgggaaaaggtctgaga 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space:   688262
Effective search space used:   688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_n07.g1 MSMg01no452_n07.g1 CHROMAT_FILE:
MSMg01no452_n07.g1 PHD_FILE: MSMg01no452_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:31 2005
         (576 letters)



>mm_chr5_111553845_111554820
          Length = 976

 Score =  681 bits (352), Expect = 0.0
 Identities = 355/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtactgggtcgtagacagttgtggttaatgagttcagaccgatttgtgggctccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcagtactgggtcgtagacagttgtggttaatgagttcagaccgatttgtgggctccagt 297

                                                                       
Query: 61  gggtctggtcccgtggatctgatacagggagatatcatggttaaactttcactttgaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gggtctggtcccgtggatctgatacagggagatatcatggttaaactttcactttgaaac 237

                                                                       
Query: 121 tctgctctcaggtctcagtgatcaagaatagagagtgaagaggaagaaggaaggagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tctgctctcaggtctcagtgatcaagaatagagagtgaagaggaagaaggaaggagaaaa 177

                                                                       
Query: 181 gaggaagaggaaggagaaaaactcaacagttgggaactaacactaaatgagtgtaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gaggaagaggaaggagaaaaactcaacagttgggaactaacactaaatgagtgtaaatga 117

                                                                       
Query: 241 gagtgtctagtgcagtggctctcaaccttcccaacaccttgaccctttaatacagtccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gagtgtctagtgcagtggctctcaaccttcccaacaccttgaccctttaatacagtccct 57

                                                                   
Query: 301 catgtgcggtgacgcccaaccacaaaattattccattgttactcacaactgtaatt 356
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 56  catgtgcggtgacgcccaaccacaaaattattccattgttactcataactgtaatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |