BAC Information

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BAC

Clone NameMSMg01-452O03
Chromosome5 (Build37)
Map Location 144,129,128 - 144,129,777
singlet/doubletsinglet
Overlap geneGrid2ip
Upstream geneWipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4
Downstream geneKdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452O03.T7 (MSMg01no452_o03.b1)MSMg01-452O03.TJ (MSMg01no452_o03.g1)
ACCAG540029AG540030
length752754
length of high quality
(start - end)
499 (70 - 568)640 (82 - 721)
definitionCHROMAT_FILE: MSMg01no452_o03.b1 PHD_FILE: MSMg01no452_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:35 2005CHROMAT_FILE: MSMg01no452_o03.g1 PHD_FILE: MSMg01no452_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCGAGAGAATCCGCG
GAATTCACAGCATTTCCCCTGTCTGAGCTTTCAGAGTGCTGGGACCACAG
GCAGTGAACAAAAGAGGACCCTGTGGACAAGGTGGATGCTGAAGATTGAT
ACCCAAGGGTGTCCTCTGATCTCTATACATGCACCAAGGCATAAGAGCAC
CTGTATGTGCACGCACACTCACACACACACACACACACACACACACACAC
AGAGTCACACACTCGTACATACTTAGAGATTTTTTTTTTGGTTGTTTCTT
TTTTGGTTTTTCTGTGTAGCCCTGGCTGTCCCAAACTTGCATTGTAGACC
AGGCTAGCCTTGAACTCTCAGAGATCTGTCTGCTTTTGCCTCTGGAGTGC
TGGGATCAAAGGAGTGAGCCATCACATCTGGACTATACACTCAAAATGTT
TAAAAAGACCTTAGGTTATAGCTCAGCACTTGTCTGGAATCCCACATTGA
GGGGTGAGGGTGTGGCTCAGCAGGAGAACACTGAGCGTGACTGTGGGTGA
CATCAACTTGACAGACTCCAGCATCACCTGGAAGGTGGACCTCTGGGCGT
GCTGGTGGGAGACGAGCTAAATAATGTTAATTAATGCCAGGCAGTGGTGG
CTCATGCCTTTAGTCCCAGCACTAGGGAGGCAGAGGTAGGTAGGTAGGTT
TCTCAATTCCAGGCCAACCTGGTCTATAGAGTGAGCCAGGGCTACACAGG
GA
CCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAGAGGGGG
TGACACTATAGAAGGTACCTGAAAAATGGCAGGCCAGCCAGAGCTACCTA
ATGAGACCATTTCTCAAATAAGTAAAATAAAAACAAAGATATCCAGTGAT
GATAGCACACTCCTTTAATCCCAGTACGCGGGAGGCAGAGGCAGGTGGCT
CTCTGTGATTTTGAGACCAGCTGTACACCTTGTCTCCAAAAATAAAAATA
TTTCCATATGAGGACCAGGGATATGACTCGGGTCTGGTGTAAGCACAAGG
ACCAGATCGGATCCCCGGGTCTGTTTTTTGTTAATTGTCCAGCTGTGATT
TCAGCCTTGGCCAAGACGGGGGTCTCCAGAGCAAAGCTGGTTAGCAACAC
CTGCATGCATATATACCCACATTCACAAAAGCATGCATATGGCACACATG
CACAGCGTATACAAAACAACGAGAACCCATGTATAATACAGCTTTGTGTG
AGAGCTGATGGTGGGGAGGTGTGCGATCAGACAGTGTTGATCTTCTGTAT
GTGGCGAGGGTGTGTGTCTCTTTTTCTTTTTTTCTCCAGGACAACTTTGC
GGTCCTACCCTTTCTCTGTGTGGGAGCTACCCTGTGTGTGCACACGGGCT
GCTTAGAAGCAGCATCCTTGGCCTCTACCCACTAGATGCCAGCACCACAC
CCCTCTCCCAGCTGTCATGTTGTGGCAGCCAAAAAGACATCTTGAGAGTG
TGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_o03.g1 MSMg01no452_o03.g1 CHROMAT_FILE:
MSMg01no452_o03.g1 PHD_FILE: MSMg01no452_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:35 2005
         (640 letters)



>mm_chr5_144128940_144129977
          Length = 1038

 Score = 1141 bits (590), Expect = 0.0
 Identities = 631/652 (96%), Gaps = 14/652 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccagccagagctacctaatgagaccatttctcaaataagtaaaataaaaacaaagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ggccagccagagctacctaatgagaccatttctcaaataagtaaaataaaaacaaagata 248

                                                                       
Query: 61  tccagtgatgatagcacactcctttaatcccagtacgcgggaggcagaggcaggtggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tccagtgatgatagcacactcctttaatcccagtacgcgggaggcagaggcaggtggctc 308

                                                                       
Query: 121 tctgtgattttgagaccagctgtacaccttgtctccaaaaataaaaatatttccatatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tctgtgattttgagaccagctgtacaccttgtctccaaaaataaaaatatttccatatga 368

                                                                       
Query: 181 ggaccagggatatgactcgg--------gt----ctggtgtaagcacaaggaccagatcg 228
           |||||||||||||| |||||        ||    ||||||||||||||||||||||||||
Sbjct: 369 ggaccagggatatggctcggtggctccagtgcttctggtgtaagcacaaggaccagatcg 428

                                                                       
Query: 229 gatccccgggtctgttttttgttaattgtccagctgtgatttcagccttggccaagacgg 288
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gatccccgggtctgtcaattgttaattgtccagctgtgatttcagccttggccaagacgg 488

                                                                       
Query: 289 gggtctccagagcaaagctggttagcaacacctgcatgcatatatacccacattcacaaa 348
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 489 gggtctccagagcaaagctggttagcaacacctgcatgcatatgtacccacattcacaaa 548

                                                                       
Query: 349 agcatgcatatggcacacatgcacagcgtatacaaaacaacgagaacccatgtataatac 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agcatgcatatggcacacatgcacagcgtatacaaaacaacgagaacccatgtataatac 608

                                                                       
Query: 409 agctttgtgtgagagctgatggtggggaggtgtgcgatcagacagtgttgatcttctgta 468
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 609 agctttgtgtgagagctgatgttggggaggtgtgcgatcagacagtgttgatcttccgta 668

                                                                       
Query: 469 tgtggcgagggtgtgtgtctctttttctttttttctccaggacaactttgcggtcctacc 528
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 669 tgtggcgagggtgtgtgtctctttttcttttt--ctccaggacaactttgcggtcctacc 726

                                                                       
Query: 529 ctttctctgtgtgggagctaccctgtgtgtgcacacgggctgcttagaagcagcatcctt 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ctttctctgtgtgggagctaccctgtgtgtgcacacgggctgcttagaagcagcatcctt 786

                                                               
Query: 589 ggcctctacccactagatgccagcaccacacccctctcccagctgtcatgtt 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ggcctctacccactagatgccagcaccacacccctctcccagctgtcatgtt 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1038
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1028
Effective search space:   647640
Effective search space used:   647640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)