Query= MSMg01no453_e22.b1 MSMg01no453_e22.b1 CHROMAT_FILE:
MSMg01no453_e22.b1 PHD_FILE: MSMg01no453_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:08 2005
(643 letters)
>mm_chr5_106308614_106309656
Length = 1043
Score = 1137 bits (588), Expect = 0.0
Identities = 625/644 (97%), Gaps = 12/644 (1%)
Strand = Plus / Minus
Query: 5 gaattccaagaattacctatagaaatcacctctaattctccagcaaagctttctatcatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaattccaagaattacctatagaaatcacctctaattctccagcaaagctttctatcatt 602
Query: 65 ccagaaacccactaactaaacttccttacttttatttaactgttttctactcattattct 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccagaaacccactaactaaactaccttacttttatttaactgttttctactcattattct 542
Query: 125 gttagcctctacattctgttagtttcttataggagacatcttaacatttttaaaaatgag 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 541 gttagcctctacattctgttagtttcttttaggagacatcttaacatttttaaaaatgag 482
Query: 185 catcatcatttccctatctacaaatgtattacaattttctttagccaattttccatcctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 catcatcatttccctatctacaaatgtattacaattttctttagccaatttcccatcctc 422
Query: 245 taatctggcctaaggttgacacaaaattaaactttgttagtcatactacatcactgtctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taatctggcctaaggttgacacaaaattaaactttgttagtcatactacatcactgtctt 362
Query: 305 taaaagattcttcagcactcattaaatgcatactactttctaaatgacaatagcccttac 364
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 361 taaaagattcttcagcgctcattaaatgcatactactttctaaatgacaatagcccttcc 302
Query: 365 caaatctgaagtatctcttaatttttagagatgctaaaaattaactatctccataagaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaatctgaagtatctcttaatttttagagatgctaaaaattaactatctccataagaat 242
Query: 425 gggtctggaaaggcagctcagcaggtcggagcaagagcacatggagctgcacacagccat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggtctggaaaggcagctcagcaggtcggagcaagagcacatggagctgcacacagccat 182
Query: 485 gtgtaacccagcgccaggggatcccgcaccttcttctggagtgcaacagcactgcactgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgtaacccagcgccaggggatcccgcaccttcttctggagtgcaacagcactgcactgc 122
Query: 545 acacacatggcatacacacagaaaagcaggcgcgcacacacaca-----cacacacacaa 599
|||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 121 acacacatggcatacacacagaaaagcaggcgtgcac-------gtgtgcgcacacacaa 69
Query: 600 acatttttaatggcacagactttagtagtgcacttgctttggtt 643
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 acatttttaatggcacagactttagtagtgcacttgctttggtt 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_e22.g1 MSMg01no453_e22.g1 CHROMAT_FILE:
MSMg01no453_e22.g1 PHD_FILE: MSMg01no453_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:08 2005
(546 letters)
>mm_chr5_106119973_106120918
Length = 946
Score = 982 bits (508), Expect = 0.0
Identities = 530/546 (97%), Gaps = 15/546 (2%)
Strand = Plus / Plus
Query: 1 accctggtcaaagcggagtgcctcaggatccaagtcatggactgcgctgtttgccccagg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 216 accctggtcaaagcggagtgcctcaggatccaagtcatgaactgcgctgtttgcc--agg 273
Query: 61 atggcttgccagctgggcttgggcacttgttctctggacttcagctgaagtaccatccag 120
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atggcttg-------------ggcacttgttctctggacttcagctgaagtaccatccag 320
Query: 121 gtcctgccgggtaagtcactacagcccagttgctgttcatgcttagactgccaatcattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctgccgggtaagtcactacagcccagttgctgttcatgcttagactgccaatcattt 380
Query: 181 caaagtcctctggccactcttgccattggcatatccccgtccttaatggggcctgaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagtcctctggccactcttgccattggcatatccccgtccttaatggggcctgaagtt 440
Query: 241 gctgactgcagtgtgtgatattcagatagtgtgtatctgcttgtggtgtgtgtgaggtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgactgcagtgtgtgatattcagatagtgtgtatctgcttgtggtgtgtgtgaggtct 500
Query: 301 agcgagagggggagggtaggctggaatatacagcccatcttcccagaaccaggctggcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcgagagggggagggtaggctggaatatacagcccatcttcccagaaccaggctggcat 560
Query: 361 taaaactcggccagccagcaggatttgtcttcagaatccacactattctgagcattcctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaactcggccagccagcaggatttgtcttcagaatccacactattctgagcattcctg 620
Query: 421 tgcagaagatgggggtgctcaccacaggggcctgaagggctgcccggtcatctcacttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcagaagatgggggtgctcaccacaggggcctgaagggctgcccggtcatctcacttaa 680
Query: 481 aagaaatgactttcagaatgctgagaaataaaggagacatttgtgagggacagcacccgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaaatgactttcagaatgctgagaaataaaggagacatttgtgagggacagcacccgt 740
Query: 541 tttaaa 546
||||||
Sbjct: 741 tttaaa 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
