BAC Information

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BAC

Clone NameMSMg01-453H06
Chromosome5 (Build37)
Map Location 74,048,536 - 74,212,534
singlet/doubletdoublet
Overlap geneSpata18
Upstream geneNpal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453H06.T7 (MSMg01no453_h06.b1)MSMg01-453H06.TJ (MSMg01no453_h06.g1)
ACCAG540461AG540462
length748755
length of high quality
(start - end)		400 (54 - 453)613 (85 - 697)
definitionCHROMAT_FILE: MSMg01no453_h06.b1 PHD_FILE: MSMg01no453_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:20 2005CHROMAT_FILE: MSMg01no453_h06.g1 PHD_FILE: MSMg01no453_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,048,536 - 74,048,922)(74,212,071 - 74,212,534)
sequence
TTTTTTTCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTTCTAAAGCTGCATGGGCCACACAGTTCAATCCTG
GTCACGTGTCCAGGGCACTATATTTTGGTGGTACCCAGCAGTCTCTGTCA
GAGCCTATCAGAACTTGGTAGCCCCTGGATCACACAGGCTCTTGCCTATT
TGCAGTGGGTTCTGGAAACCATGCTGTACTGATATCTTCTGTTTCGACGT
TACAGTCAAACTCCTGTGATCAAAATCTAAATTATTGCATCGAACTCATC
GAACAAGTTGCTAAAGTGCAGGCACAGCTCTTTGGGATCCTCACAGTGAC
AGCCCAAGAAGGTGAGAACAGCTTCTGCTTCCCCCACCCTTATCCTCTTC
GTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTCCCCTCCTCCTGATTTTTTTCTTCCTCTTCCCTTGCTGATCTTTCC
CTCGTTTCCTCTTTTTTGTTATTTTTCGTTTGCCTGTAATCATTTTTTTT
TTCTCTTTTGCCCCTGCTCTTAACTTCCTTTTCTTTTTTATAATTGCGTA
AGTTTACCTCCCTCTGATTGTTTATCTTTTTATTTCTGTTTTATAAAGGT
CCAACTCCTTTACGTTTCTTTTTTTTTTTTTTTTCCTCACCGCATTTTAT
TTTTCGTTTTTAGCCCTACAAATGCTTCTTTTTTTTGGTTTACTTTTT

TTCTTTGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGCCATCTTCTAC
TCATGGTTGAGGAAACAGAAGTCAGAAAAAAACCCCAATGCCTAAAGTCA
CAGTTAGTAAACGGTGAGGCTGGACACTCACCCCGGCAACATGACCCCAG
TGCTTGCCTTGCATCAAACGGAAGAGAGTGGAATGTTGGTTCTGACTGAA
CTACACCGGTCTGTATGAGATGAGATGATCTCTCTTAGTCTGGGGTTGCT
GGCCTCTATTTCCCTCTTTTATGACTTCCATTTGGAACCATGGCTTGCTG
TGGCAAGCAGCCTCCTCGGATCAGCCTGAGCCATCTCCTCCTGGTGACTA
CTTCTTATATAATCACCTCCCTCAGTTAACTTACCTCAGACAAACAGAAC
ATTGCCAAGCAGCTGGGATTTCACTTCGGAGGTTAGATTATAAAACCCTG
TTTCTTCTGCCTTGCTAGGACTCTTTCCTGACTCTCTCTCACTTGCAAAT
TTTGATGAAGCCTGTTGCCATATTGAGAAGGCCAACCTGATGAGCCCCTA
GGGACAAACACATCCAACATAAGTTGCAGACCTCAGTCCAAAAGCCTGCA
GTAAATTGAATCTGCCCAACAGCCACATGATGCCCTTGGCTTTGGATTCT
TCTGTAGGGATCTGATTTATTAACATATTGAACACATTGAGTGAGCATCT
ATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_h06.b1 MSMg01no453_h06.b1 CHROMAT_FILE:
MSMg01no453_h06.b1 PHD_FILE: MSMg01no453_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:20 2005
         (400 letters)



>mm_chr5_74048332_74049131
          Length = 800

 Score =  733 bits (379), Expect = 0.0
 Identities = 385/387 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttctaaagctgcatgggccacacagttcaatcctggtcacgtgtccagggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttctaaagctgcatgggccacacagttcaatcctggtcacgtgtccagggca 264

                                                                       
Query: 65  ctatattttggtggtacccagcagtctctgtcagagcctatcagaacttggtagcccctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctatattttggtggtacccagcagtctctgtcagagcctatcagaacttggtagcccctg 324

                                                                       
Query: 125 gatcacacaggctcttgcctatttgcagtgggttctggaaaccatgctgtactgatatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatcacacaggctcttgcctatttgcagtgggttctggaaaccatgctgtactgatatct 384

                                                                       
Query: 185 tctgtttcgacgttacagtcaaactcctgtgatcaaaatctaaattattgcatcgaactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgtttcgacgttacagtcaaactcctgtgatcaaaatctaaattattgcatcgaactc 444

                                                                       
Query: 245 atcgaacaagttgctaaagtgcaggcacagctctttgggatcctcacagtgacagcccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcgaacaagttgctaaagtgcaggcacagctctttgggatcctcacagtgacagcccaa 504

                                                                       
Query: 305 gaaggtgagaacagcttctgcttcccccacccttatcctcttcgtgtgtgtgtgtgtgta 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 gaaggtgagagcagcttctgcttcccccacccttatcctcttcgtgtgtgtgtgtgtgtg 564

                                      
Query: 365 tgtgtgtgtgtgtgtgtgtgtgtgtgt 391
           |||||||||||||||||||||||||||
Sbjct: 565 tgtgtgtgtgtgtgtgtgtgtgtgtgt 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_h06.g1 MSMg01no453_h06.g1 CHROMAT_FILE:
MSMg01no453_h06.g1 PHD_FILE: MSMg01no453_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:20 2005
         (613 letters)



>mm_chr5_74212071_74213083
          Length = 1013

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagccatcttctactcatggttgaggaaacagaagtcagaaaaaaaccccaatgccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 464 tatagccatcttctactcatggttgaggaaacagaagtcagaaaaaaaaatcaatgccta 405

                                                                       
Query: 61  aagtcacagttagtaaacggtgaggctggacactcaccccggcaacatgaccccagtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aagtcacagttagtaaacggtgaggctggacactcaccccggcaacatgaccccagtgct 345

                                                                       
Query: 121 tgccttgcatcaaacggaagagagtggaatgttggttctgactgaactacaccggtctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgccttgcatcaaacggaagagagtggaatgttggttctgactgaactacaccggtctgt 285

                                                                       
Query: 181 atgagatgagatgatctctcttagtctggggttgctggcctctatttccctcttttatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atgagatgagatgatctctcttagtctggggttgctggcctctatttccctcttttatga 225

                                                                       
Query: 241 cttccatttggaaccatggcttgctgtggcaagcagcctcctcggatcagcctgagccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cttccatttggaaccatggcttgctgtggcaagcagcctcctcggatcagcctgagccat 165

                                                                       
Query: 301 ctcctcctggtgactacttcttatataatcacctccctcagttaacttacctcagacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ctcctcctggtgactacttcttatataatcacctccctcagttaacttacctcagacaaa 105

                                                                       
Query: 361 cagaacattgccaagcagctgggatttcacttcggaggttagattataaaaccctgtttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cagaacattgccaagcagctgggatttcacttcggaggttagattataaaaccctgtttc 45

                                                       
Query: 421 ttctgccttgctaggactctttcctgactctctctcacttgcaa 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  ttctgccttgctaggactctttcctgactctctctcacttgcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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