Query= MSMg01no453_j24.b1 MSMg01no453_j24.b1 CHROMAT_FILE:
MSMg01no453_j24.b1 PHD_FILE: MSMg01no453_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:34 2005
(624 letters)
>mm_chr5_58080690_58081713
Length = 1024
Score = 1170 bits (605), Expect = 0.0
Identities = 617/621 (99%), Gaps = 1/621 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaacatctgggactaggaagtcttttaggaaaatgtaaataactaatctgttga 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaacatctgggcctaggaagtcttttaggaaaatgtaaataactaatctgttga 263
Query: 64 ctttttttcacatccaatcatagtatctatttcttcttctggtaccttgtgtctgtagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttttttcacatccaatcatagtatctatttcttcttctggtaccttgtgtctgtagag 323
Query: 124 aaattcatgtgctttcctaagttatcctatttggggttttggcttatatcttgttttgtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaattcatgtgctttcctaagttatcctatttggggttttggcttatatcttgttttgtt 383
Query: 184 tcagttctgggcatggagaacacaactttgaatgcagtatgtatgtaagtgattaggtac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcagttctgggcatggagaacacaactttgaatgcagtatgtatgtaagtgattaggtac 443
Query: 244 tgagctatgtcccaagactcaaccatttatttacatacaattttatatagtattctctac 303
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgagctatgtcctaagactcaaccatttatttacatacaattttatatagtattctctac 503
Query: 304 tattgccttttcttttaaagataaataatgttcctttctgggcttagtaatttgagtctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tattgccttttcttttaaagataaataatgttcctttctgggcttagtaatttgagtctt 563
Query: 364 ctgtatcaggcaaatgctgaatatgtctataaatttctttagctttactttattttttat 423
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 564 ctgtatcaggcaaatgctgaatatgtctataaattactttagctttactttattttttat 623
Query: 424 ttttttatatttttgcttatttgtttttgttttttgaaaagaaagagataggatcacagt 483
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttttt-atatttttgcttatttgtttttgttttttgaaaagaaagagataggatcacagt 682
Query: 484 agatttaaacatatgcataaatgcatttattagatctatgttaatctgcagcaatcattt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agatttaaacatatgcataaatgcatttattagatctatgttaatctgcagcaatcattt 742
Query: 544 ttgaagataaggtcaaacaaaaatattcttggaaaatatatgatttcagcatatttgtat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttgaagataaggtcaaacaaaaatattcttggaaaatatatgatttcagcatatttgtat 802
Query: 604 agcatgtgaatacttgttccc 624
|||||||||||||||||||||
Sbjct: 803 agcatgtgaatacttgttccc 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_j24.g1 MSMg01no453_j24.g1 CHROMAT_FILE:
MSMg01no453_j24.g1 PHD_FILE: MSMg01no453_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:34 2005
(611 letters)
>mm_chr5_58225768_58226778
Length = 1011
Score = 1094 bits (566), Expect = 0.0
Identities = 592/602 (98%), Gaps = 4/602 (0%)
Strand = Plus / Minus
Query: 1 ttgagaaggtaggaagacaagcaagtgtggtacatggcttggatcctaacactcagaagg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 738 ttgagaaggtaggaagacaagcaagtgtggcacatggcttggatcctaacactcagaagg 679
Query: 61 aagatctctgagttcaagacaaacctggcctacagatttccaagactgccaggcttttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aagatctctgagttcaagacaaacctggcctacagatttccaagactgccaggcttttgt 619
Query: 121 tactcaaagaaacctgaatcgaagaaaccaaggaaggccaggggagaggggggaagagag 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tactcaaagaaacctgaatcaaagaaaccaaggaaggccaggggagaggggggaagagag 559
Query: 181 gagagagaggagagaagacagacagacaggcaggcaggcttagagttagagaggaagggg 240
||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct: 558 gagagagaggagagaagacagacagacag--a--caggcttagagttagagagggagggc 503
Query: 241 aggctcttactttctatctcaagctggcttggagctcactaggtaacaccaactagcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aggctcttactttctatctcaagctggcttggagctcactaggtaacaccaactagcctc 443
Query: 301 aagtgtcagaatgatcacaagtgagtacacactgaccaatcactgttgaccttaaacatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aagtgtcagaatgatcacaagtgagtacacactgaccaatcactgttgaccttaaacatg 383
Query: 361 gaagaaggctgtgagacaaaaactgcagctaacctcatgcaggtaaaaaagtatgaggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaagaaggctgtgagacaaaaactgcagctaacctcatgcaggtaaaaaagtatgaggat 323
Query: 421 gtggatctttcttcagaaaccacagttaagaacacaaactgacacttggatttcaaccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtggatctttcttcagaaaccacagttaagaacacaaactgacacttggatttcaaccca 263
Query: 481 ttgagccacattcccatcctcagaccttcagaaaagcaaaacaataaatgactgcgttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgagccacattcccatcctcagaccttcagaaaagcaaaacaataaatgactgcgttta 203
Query: 541 aaagtaatttgtaaccctcctttggcctagcaataggtagcttatacaatatacatttat 600
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaagtaatttataaccctcctttggcctagcaataggtagcttatacaatatacatttat 143
Query: 601 gt 602
||
Sbjct: 142 gt 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
