Query= MSMg01no453_m12.b1 MSMg01no453_m12.b1 CHROMAT_FILE:
MSMg01no453_m12.b1 PHD_FILE: MSMg01no453_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:46 2005
(698 letters)
>mm_chr5_21044383_21045480
Length = 1098
Score = 1245 bits (644), Expect = 0.0
Identities = 678/694 (97%), Gaps = 8/694 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgtttagctctataccccatttttaatagggttacttggttctctggagtct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctataccccatttttaatagggttacttggttctctggagtct 264
Query: 65 aacttcttgagttctttgtatatattggatattagcccgctatcggatgtagggttggta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacttcttgagttctttgtatatattggatattagcccgctatcggatgtagggttggta 324
Query: 125 acgatcttttcccaatctgttggttgccattttgtcctattgacagtatcctttgcctta 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagatcttttcccaatctgttggttgccattttgtcctattgacagtatcctttgcctta 384
Query: 185 cagaaacttaaggactttcaccacaggctaatgaatggttaagtgaacaaacaaacaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaaacttaaggactttcaccacaggctaatgaatggttaagtgaacaaacaaacaaaa 444
Query: 245 aaaaagttagagaacacaaggtagaacactactaatgttacctctgaatatttgtgtgct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaagttagagaacacaaggtagaacactactaatgttacctctgaatatttgtgtgct 504
Query: 305 ttacaggatattgaacgaatggtgtgcatgctgctccatacatggcagtttaaaggagtg 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 ttacaggatattgaacgaatggtgtgcatgctgctccatacattgcagtttaaaggagtg 564
Query: 365 tacatgcatgtggagagaatcccagaaagctatgccaggagatgctggtacaatctgagt 424
|||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 tacatgcatgtggaaagaataccagaaagctatgccaagagatgctggtacaatctgagt 624
Query: 425 ggtaacatttcaagtagtctaaaaatatttttctttatatattttcaaatttttatgcat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtaacatttcaagtagtctaaaaatatttttctttatatattttcaaatttttatgcat 684
Query: 485 ctgttaagaaaagactcacttgagtaaagctgctatgcaagcctagcaaacctgggttca 544
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 685 ctgttaagaaaagactcacttgaataaagctgctatgcaagcctagcaaacctaggttca 744
Query: 545 acctctgggacccatacggtggaaagagaggactgatctcaccaagtcgtcctcggacac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acctctgggacccatacggtggaaagagaggactgatctcaccaagtcgtcctcggacac 804
Query: 605 acacacacacacacacacacacacacacacacacacacacacacttttaaatatgattag 664
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 805 acacacacacacacacacacacacacacacacacac--------ttttaaatatgattag 856
Query: 665 aagtcaaaatgtttgtaactttaaaatgataatt 698
|||||||||||||| |||||||||||||||||||
Sbjct: 857 aagtcaaaatgtttataactttaaaatgataatt 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_m12.g1 MSMg01no453_m12.g1 CHROMAT_FILE:
MSMg01no453_m12.g1 PHD_FILE: MSMg01no453_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:46 2005
(437 letters)
>mm_chr5_21178947_21179783
Length = 837
Score = 816 bits (422), Expect = 0.0
Identities = 434/438 (99%), Gaps = 2/438 (0%)
Strand = Plus / Minus
Query: 1 tgtgcacatgtaagctggttatagaaaaaaaaaactaccc-cccccccaaaaaaaaaaac 59
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 637 tgtgcacatgtaagctggttatagaaaaaaaaaactacccaccccccc-aaaaaaaaaac 579
Query: 60 caaacaaaaacaaccaaacaaaccaaaaaccattggcttttagttttgtgctgggcatat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caaacaaaaacaaccaaacaaaccaaaaaccattggcttttagttttgtgctgggcatat 519
Query: 120 ttcatcccttcctctgggttctctcatgcccagacattgtagctaagtcagctggaattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttcatcccttcctctgggttctctcatgcccagacattgtagctaagtcagctggaattt 459
Query: 180 agcgtttcctgcttttctcaggtgcagcgctggggattgaatccagagccgggaacaagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agcgtttcctgcttttctcaggtgcagcgctggggattgaatccagagccgggaacaagc 399
Query: 240 gaggccgagtgatcgataactagcctggcctgtctccttagctagagaacacagaggctt 299
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 398 gaggccgagtgattgataactagcctggcctgactccttagctagagaacacagaggctt 339
Query: 300 tgtttgtgggttcctggagcattcgaccgctgtacagtaaacatcacccttgtgctgatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgtttgtgggttcctggagcattcgaccgctgtacagtaaacatcacccttgtgctgatg 279
Query: 360 cacacggctgggctcttccgggaggagttctgggaagggtggggcgccgtgagagcgcgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cacacggctgggctcttccgggaggagttctgggaagggtggggcgccgtgagagcgcgc 219
Query: 420 ccctttgatctctctagc 437
||||||||||||||||||
Sbjct: 218 ccctttgatctctctagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
