Query= MSMg01no453_m22.b1 MSMg01no453_m22.b1 CHROMAT_FILE:
MSMg01no453_m22.b1 PHD_FILE: MSMg01no453_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:48 2005
(701 letters)
>mm_chr5_55021392_55022494
Length = 1103
Score = 1207 bits (624), Expect = 0.0
Identities = 682/704 (96%), Gaps = 10/704 (1%)
Strand = Plus / Plus
Query: 5 gaattcattgtttttaatagctgagtagtactccattgaataaatgtactacattttctg 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 203 gaattcattgtttttaatagctgagtagtactccattgaataaatgtaccacattttctg 262
Query: 65 tatccattcctctgctgaagataatctgagctcattccagcttttggctattataagtaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 263 tatccattcctctgctgaagataatctgagctcattccagcttttggctattataaataa 322
Query: 125 ggctgctatgaacatggttgagcatgtgtccttgttatatgttggagaatcttttgggta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggctgctatgaacatggttgagcatgtgtccttgttatatgttggagaatcttttgggta 382
Query: 185 tatg--ca-aagtggtattgcagcgtcctcaggtagtgctgtatccaattttctgaggaa 241
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatgcccagtagtggtattgcagcgtcctcaggtagtgctgtatccaattttctgaggaa 442
Query: 242 ccaccagactgttttccagagtggttctaccagcttgcaatctgcaccagcatctgctgt 301
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 ccaccagactgttttccagagtggttctaccagcttgcaatctgcacccgcatctgctgt 502
Query: 302 cacttgagtttttaatcttagccattctgactggtgtgatatggaaccccagggttgctt 361
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 503 cacttgagtttttaatcttagccattctgactgatgtgatatggaaccccagggttgttt 562
Query: 362 tgatttgcatttccctgatgactaaggatgttgaacatttcttgatttttattactatgg 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tga-ttgcatttccctgatgactaaggatgttgaacatttcttgatttttattactatgg 621
Query: 422 agaagcagctataagcattaagtctagtctggctagattgtggttgagttgggaataaca 481
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 622 agaagcagctataagca-taagtctagtctggctagattgtggttgggttgggaataaca 680
Query: 482 ta----ttgttttcatctgccatttccttggtggtttggcttttgttcttcaattttggg 537
|| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 tattacttgttttcatc-gccatttccttggtggtttggcttctgttcttcaattttggg 739
Query: 538 tttgtaggtatctgtcagtgagctgtctcttcttaaactcaacagacacgtctttcaatc 597
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 740 tttgtaggtatctgtcaatgagctgtttcttcttaaacacaacagacacgtctttcaatc 799
Query: 598 cagctagctagttgtctctttccatgtgtacagtgatgccatcatgtttaaggctattgt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cagctagctagttgtctctttccatgtgtacagtgatgccatcatgtttaaggctattgt 859
Query: 658 tgagcagcattgtcatttcctatggtttttattgttggttgtga 701
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 860 tgagcagcattgtcatttcctgtggtttttattgttggttgtga 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1103
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1093
Effective search space: 755263
Effective search space used: 755263
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no453_m22.g1 MSMg01no453_m22.g1 CHROMAT_FILE:
MSMg01no453_m22.g1 PHD_FILE: MSMg01no453_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:48 2005
(641 letters)
>mm_chr5_55187121_55188161
Length = 1041
Score = 1172 bits (606), Expect = 0.0
Identities = 632/641 (98%), Gaps = 2/641 (0%)
Strand = Plus / Minus
Query: 1 ttcttctttcagttaattttggtgaaaataactaaaattcctccagggcaataatacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 ttcttctttcagttaattttggtgaaaataactaaaattcctccagggcaataatacttg 936
Query: 61 acagactattcaatcacactagacaatccaaacactgtataatcccatcttttattcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 acagactattcaatcacactagacaatccaaacactgtataatcccatcttttattcaga 876
Query: 121 gaagttctcccctatttaaaatatatatatataatggcagtacatacatttcccttttgc 180
|||||||||||||| |||||| | | |||||||| ||||||||||||||||||||||||
Sbjct: 875 gaagttctcccctacttaaaa-a-aaatatataacagcagtacatacatttcccttttgc 818
Query: 181 cacttttaactataattttttttgaagtctactagttcactctgaagcattctgtagatg 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 817 cacttttaactataattttttttgaagtctactagttcactctgaagctttctgtagatg 758
Query: 241 tgcccacactgaattccacatttctaaactcctcaggaacagccctagactcctaagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgcccacactgaattccacatttctaaactcctcaggaacagccctagactcctaagttc 698
Query: 301 tattagctttattctacccattctgcagtggatatttgctgtttgttatgcactgcattg 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 697 tattagctttattctacccattccgcagtggatatttgctgtttgttatgcactgcattg 638
Query: 361 cctaggctcgcagcatccagcctttacttccgtgtgcctgcattgctcgtgtttggagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cctaggctcgcagcatccagcctttacttccgtgtgcctgcattgctcgtgtttggagct 578
Query: 421 agagaatgctaagagaattgaatttctgcgatcaggctgctctctctctcggtggaggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agagaatgctaagagaattgaatttctgcgatcaggctgctctctctctcggtggaggaa 518
Query: 481 aaataaaacatagggagagtgaattatgagagaaggcaggaaggaaggtgtgtggaaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaataaaacatagggagagtgaattatgagagaaggcaggaaggaaggtgtgtggaaatt 458
Query: 541 caggtcagacataactgcagcttcccctagcccangagtggggaaggtggtgaggagagg 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 457 caggtcagacataactgcagcttcccctagcccaggagtggggaaggtggtgaggagagg 398
Query: 601 agttggtgaaacttaagcagggctaataagcatttctgagg 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agttggtgaaacttaagcagggctaataagcatttctgagg 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
