NNNAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAATGATATGTACTCACAAATAAGTGGATATTAGCCCAG
AAACTTAGTATACCCGAGATATAAGAGACAATTTGTAAAACACATGAAAC
TGAAGAAGTACAAAGACCAAAGTGTAGACACTTTGCCCCTTCTTAGAATT
GGAAACAATCACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAG
ACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGAGCCATCCCAT
AATTAGCCTCTAAACGATGACACCATTGCATACACTAGCAAGCGTTTGCT
GAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTAGGCTGGCGCCTAGC
AAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCC
CCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAA
CCCTGTAGGTGCAACAACATTATGAACTAACCAGTACCCAGAAGCTCTTG
ACTCTAGCTGCATATGTATCAAAAGATGGCCTAATCGGCTATCACTGGAA
AGAGAGGCCCATTGGGCATGCAAACTTTATATGCCCCAGTACAGGAGAAC
CCCAGGGCCAAAAAGTGGGGATGGGTGGGTAGGGAAAGTGGGGGNANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTNTNNNNTTTNNTTTTTTTTTTT
TTTT

NNCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCAACAAGAAGAATAG
TTACAGTAATCACTATCTAATTAAATTCTGAATAATAAACAGAAAAAATA
TTCGTAGTAGAGAATTCTGGGTAAGCCAATTTAATTAATGTTCAGACTCT
ATTTCTACAGTGTTTCTGGAAAGGGCATAACATGTTTGGGGCTTTTAAGA
ATGGCACTTCATTCCCCATTGCAAGATAGATACTGATTTAATTTGGATCC
TTACTTTTTCATATGTTCCAATAGACACGGCCCCCAGGGTTATCAGTGAC
ATTTTAATATGCATAGCATCTGTGCCTACCTCACTGGGCTTCCTCCCCTG
TTTTGGAAGAGAAGTATATTGTGATTTTTCCTCTACTGATTTTCTTCTCT
CTTTACATGATAATGTTTTTAACTTAATGGGTGACTAGAATTATATTGGC
TCTTGTAATTAAAATCCTTCAGTTGTCTGACGTATGGCCCTGAAGACACA
CAGCCATTCGGGTAGTATTCTTGTAGAGAGCTAATAAGCTGAGTCTCATC
ATTAAGGATCATTAAGCAAAGCATCTTGCAATGGCCTTGTACAAAACAAC
TGGCTTATACATTTCAAGAATAGCAAATGCCATAAAGATGGAGTTTGGGA
AATTATTCCTTGGTGGAAGCCAGGGAGACTTGGATGTTAGATGAACCACA

Query= MSMg01no453_n11.g1 MSMg01no453_n11.g1 CHROMAT_FILE:
MSMg01no453_n11.g1 PHD_FILE: MSMg01no453_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:50 2005
         (669 letters)



>mm_chr5_90116865_90117933
          Length = 1069

 Score = 1232 bits (637), Expect = 0.0
 Identities = 662/671 (98%), Gaps = 2/671 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccccaacaagaagaatagttacagtaatcactatctaattaaattctgaataataaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tccccaacaagaagaatagttacagtaatcactatctaattaaattctgaataataaaca 618

                                                                       
Query: 61  gaaaaaatattcgtagtagagaattctgggtaagccaatttaattaatgttcagactcta 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaaaaaatattcatagtagagaattctgggtaagccaatttaattaatgttcagactcta 558

                                                                       
Query: 121 tttctacagtgtttctggaaagggcataacatgtttggggcttttaagaatggcacttca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 tttctacagtgtttctggaaagggcataacatgtttggggcttttaagaatgccacttca 498

                                                                       
Query: 181 ttccccattgcaagatagatactgatttaatttggatccttactttttcatatgttccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttccccattgcaagatagatactgatttaatttggatccttactttttcatatgttccaa 438

                                                                       
Query: 241 tagacacggcccccagggttatcagtgacattttaatatgcatagcatctgtgcctacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tagacacggcccccagggttatcagtgacattttaatatgcatagcatctgtgcctacct 378

                                                                       
Query: 301 cactgggcttcctcccctgttttggaagagaagtatattgtgatttttcctctactgatt 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cactgggcttcctccactgttttggaagagaagtatattgtgatttttcctctactgatt 318

                                                                       
Query: 361 ttcttctctctttacatgataatgtttttaacttaatgggtgactagaattatattggct 420
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 317 ttcttctctctttacatgataatgtttttaactgaatgagtgactagaattatattggct 258

                                                                       
Query: 421 cttgtaattaaaatccttcagttgtctgacgtatggccctgaagacacacagccattcgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 257 cttgtaattaaaatccttcagttgtctgacgtatggccctgaagacacacagccatttgg 198

                                                                       
Query: 481 gtagtattcttgtagagagctaataagctgagtctcatcattaaggatcattaagcaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtagtattcttgtagagagctaataagctgagtctcatcattaaggatcattaagcaaag 138

                                                                       
Query: 541 catcttgcaatggccttgtacaaaacaactggcttatacatttcaagaatagcaaatgcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 catcttgcaatggccttgtacaaaacaactggcttatacatttcaagaatagcaaatgcc 78

                                                                       
Query: 601 ataaagatggagtttgggaaattattcc--ttggtggaagccagggagacttggatgtta 658
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 77  ataaagatggagtttgggaaattattcctgttggtggaagccagggagacttggatgtta 18

                      
Query: 659 gatgaaccaca 669
           |||| ||||||
Sbjct: 17  gatggaccaca 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)