Query= MSMg01no453_n22.b1 MSMg01no453_n22.b1 CHROMAT_FILE:
MSMg01no453_n22.b1 PHD_FILE: MSMg01no453_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:53 2005
(671 letters)
>mm_chr5_78460196_78461265
Length = 1070
Score = 924 bits (478), Expect = 0.0
Identities = 508/518 (98%), Gaps = 1/518 (0%)
Strand = Plus / Minus
Query: 153 ggtatagagatttcacctgtcattgatcaagatcctatttcaaaactgagatatccagta 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ggtatagagatttcacctgtcattgatcaagatcctatttcaaaactgagatatccagta 1011
Query: 213 tctaaaccttaagcattcatccaaaatccatgcccttttaactgcattcctttagaatat 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 tctaaaccttaagcattcatccaaaatccatgcccttttaactgcattcctttagaatat 951
Query: 273 gtccatgcttggcatggtgacacaaccctgtaactctagcatttgggaggctgaggcaga 332
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 gtccatgcttggcatgatgacacaaccctgtaactctagcatttgggaggctgaggcaga 891
Query: 333 agtgttgtgaattctaagacctcccccagcccccgcaagaaacaaagaagtgtacagata 392
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 890 agtgttgtgagttctaagacctcccccagcccccacaagaaacaaagaagtgtacagata 831
Query: 393 ttcattcatggctgctgtacagagtgagatcctttctccaacagaaaagagaaaaggaaa 452
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 830 ttcattcatggctgctgtacagagtgagatcctttccccagcagaaaagagaaaaggaaa 771
Query: 453 gacagaggaggggaggggaggatagcttacagtccttctatacatctctagaccactctt 512
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 770 gacagaggaggggaggggaggatagcttatagtccttctatacatctctagaccactctt 711
Query: 513 gcaggatcccttgaacatgctcctgtccaaactgccttctgccattccttcaaaatcttc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gcaggatcccttgaacatgctcctgtccaaactgccttctgccattccttcaaaatcttc 651
Query: 573 ttttcattcttccacattattatgactacctgtgaaccccttggaggtctgtgtgcctcc 632
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttttcattcttccacgttattatgactacctgtgaaccccttggaggtctgtgtgcctcc 591
Query: 633 ccaagtatgcagcaacttccatctttacacctcctgac 670
||||||||||| | ||||||||||| ||||||||||||
Sbjct: 590 ccaagtatgcatcgacttccatctt-acacctcctgac 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space: 700660
Effective search space used: 700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_n22.g1 MSMg01no453_n22.g1 CHROMAT_FILE:
MSMg01no453_n22.g1 PHD_FILE: MSMg01no453_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:53 2005
(641 letters)
>mm_chr5_78219970_78221010
Length = 1041
Score = 1065 bits (551), Expect = 0.0
Identities = 599/641 (93%), Gaps = 40/641 (6%)
Strand = Plus / Plus
Query: 1 atatttaacagggccatatgcataatccccaaagctgttacttctatagctctaggatat 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 atatttaacagggccatatgcataatccccaaacctgttacttctatagctctaggatat 260
Query: 61 tcaggtaataaaacaaatattgacttagtgttttctccagggatggtatactcctaagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggtaataaaacaaatattgacttagtgttttctccagggatggtatactcctaagtc 320
Query: 121 ctggggcacactggtcaccacagcctagggaaaatgcagtgcttagtttgatagccaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ctggggcacactggtcaccacagcctagggaaaatgcagtgcttagtttgacagccaaac 380
Query: 181 aaagcagtgttggattgttccaagatgagagcattttctcaaataaggcagtccatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcagtgttggattgttccaagatgagagcattttctcaaataaggcagtccatgaaa 440
Query: 241 gtaccctacctgtaaggttatagtagcagaaagggctgggagactcatttttgagccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaccctacctgtaaggttatagtagcagaaagggctgggagactcatttttgagccttt 500
Query: 301 tatttatctaaaaggcacagttatggaataaatttgtaggtagtttcaaactccaagatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttatctaaaaggcacagttatggaataaatttgtaggtagtttcaaactccaagatt 560
Query: 361 tccctttatggggaccagtgggagacaaggtttctaagagctgagtgctttgaaacgttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccctttatggggaccagtgggagacaaggtttctaagagctgagtgctttgaaacgttg 620
Query: 421 ctttcttgggcaagaggtattgccttattttatggagagtgcatttctgataataaaccg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcttgggcaagaggtattgccttattttatggagagtgcatttctgataataaaccg 680
Query: 481 agtgttcttacagtatttatttatttatttatttatttatttatttatttatttatttat 540
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgttcttacagtatttatttatttatttatttatttatttattta------------- 727
Query: 541 ttatttatttatttatttatttatttagcacaaaatactgaagtcctaagagcagctatg 600
|||||||||||||||||||||||||||||||||
Sbjct: 728 ---------------------------gcacaaaatactgaagtcctaagagcagctatg 760
Query: 601 gacttcttggttttataattgagtacaatctccttaggagc 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gacttcttggttttataattgagtacaatctccttaggagc 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|