BAC Information

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BAC

Clone NameMSMg01-453N22
Chromosome5 (Build37)
Map Location 78,220,170 - 78,461,265
singlet/doubletdoublet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453N22.T7 (MSMg01no453_n22.b1)MSMg01-453N22.TJ (MSMg01no453_n22.g1)
ACCAG540781AG540782
length791783
length of high quality
(start - end)
671 (45 - 715)641 (75 - 715)
definitionCHROMAT_FILE: MSMg01no453_n22.b1 PHD_FILE: MSMg01no453_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:53 2005CHROMAT_FILE: MSMg01no453_n22.g1 PHD_FILE: MSMg01no453_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,460,749 - 78,461,265)(78,220,170 - 78,220,770)
sequence
CCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAAATTAAGAAATATAACAAACCTAGGTGTGGAGGGAGTTTCCAG
GAGATAACATCAAAGTATTATAATGATTTTATTTCCAAATTACTGTAGTT
CCACCAAGATGCAAGATAAGCATTTCTACTCTAGTGTAATTGTAAAGGTA
TAGAGATTTCACCTGTCATTGATCAAGATCCTATTTCAAAACTGAGATAT
CCAGTATCTAAACCTTAAGCATTCATCCAAAATCCATGCCCTTTTAACTG
CATTCCTTTAGAATATGTCCATGCTTGGCATGGTGACACAACCCTGTAAC
TCTAGCATTTGGGAGGCTGAGGCAGAAGTGTTGTGAATTCTAAGACCTCC
CCCAGCCCCCGCAAGAAACAAAGAAGTGTACAGATATTCATTCATGGCTG
CTGTACAGAGTGAGATCCTTTCTCCAACAGAAAAGAGAAAAGGAAAGACA
GAGGAGGGGAGGGGAGGATAGCTTACAGTCCTTCTATACATCTCTAGACC
ACTCTTGCAGGATCCCTTGAACATGCTCCTGTCCAAACTGCCTTCTGCCA
TTCCTTCAAAATCTTCTTTTCATTCTTCCACATTATTATGACTACCTGTG
AACCCCTTGGAGGTCTGTGTGCCTCCCCAAGTATGCAGCAACTTCCATCT
TTACACCTCCTGACAGCCCATGTTGTTCCTGAAGTTCTTTACTCCTATAA
AACTTGGTTCATACTTGTGAAGTTACATATTCCCTCATTTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATATTTAACAGGGCCATATGCATAAT
CCCCAAAGCTGTTACTTCTATAGCTCTAGGATATTCAGGTAATAAAACAA
ATATTGACTTAGTGTTTTCTCCAGGGATGGTATACTCCTAAGTCCTGGGG
CACACTGGTCACCACAGCCTAGGGAAAATGCAGTGCTTAGTTTGATAGCC
AAACAAAGCAGTGTTGGATTGTTCCAAGATGAGAGCATTTTCTCAAATAA
GGCAGTCCATGAAAGTACCCTACCTGTAAGGTTATAGTAGCAGAAAGGGC
TGGGAGACTCATTTTTGAGCCTTTTATTTATCTAAAAGGCACAGTTATGG
AATAAATTTGTAGGTAGTTTCAAACTCCAAGATTTCCCTTTATGGGGACC
AGTGGGAGACAAGGTTTCTAAGAGCTGAGTGCTTTGAAACGTTGCTTTCT
TGGGCAAGAGGTATTGCCTTATTTTATGGAGAGTGCATTTCTGATAATAA
ACCGAGTGTTCTTACAGTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAGCACAAAAT
ACTGAAGTCCTAAGAGCAGCTATGGACTTCTTGGTTTTATAATTGAGTAC
AATCTCCTTAGGAGCTGATTCCTCCTGGTCTCANGGTTTTTTTTTTTTTT
TTAAATCTCTGCCAGNCTTGTTTCTCTGGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_n22.b1 MSMg01no453_n22.b1 CHROMAT_FILE:
MSMg01no453_n22.b1 PHD_FILE: MSMg01no453_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:53 2005
         (671 letters)



>mm_chr5_78460196_78461265
          Length = 1070

 Score =  924 bits (478), Expect = 0.0
 Identities = 508/518 (98%), Gaps = 1/518 (0%)
 Strand = Plus / Minus

                                                                        
Query: 153  ggtatagagatttcacctgtcattgatcaagatcctatttcaaaactgagatatccagta 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ggtatagagatttcacctgtcattgatcaagatcctatttcaaaactgagatatccagta 1011

                                                                        
Query: 213  tctaaaccttaagcattcatccaaaatccatgcccttttaactgcattcctttagaatat 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 tctaaaccttaagcattcatccaaaatccatgcccttttaactgcattcctttagaatat 951

                                                                        
Query: 273  gtccatgcttggcatggtgacacaaccctgtaactctagcatttgggaggctgaggcaga 332
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  gtccatgcttggcatgatgacacaaccctgtaactctagcatttgggaggctgaggcaga 891

                                                                        
Query: 333  agtgttgtgaattctaagacctcccccagcccccgcaagaaacaaagaagtgtacagata 392
            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 890  agtgttgtgagttctaagacctcccccagcccccacaagaaacaaagaagtgtacagata 831

                                                                        
Query: 393  ttcattcatggctgctgtacagagtgagatcctttctccaacagaaaagagaaaaggaaa 452
            |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 830  ttcattcatggctgctgtacagagtgagatcctttccccagcagaaaagagaaaaggaaa 771

                                                                        
Query: 453  gacagaggaggggaggggaggatagcttacagtccttctatacatctctagaccactctt 512
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 770  gacagaggaggggaggggaggatagcttatagtccttctatacatctctagaccactctt 711

                                                                        
Query: 513  gcaggatcccttgaacatgctcctgtccaaactgccttctgccattccttcaaaatcttc 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  gcaggatcccttgaacatgctcctgtccaaactgccttctgccattccttcaaaatcttc 651

                                                                        
Query: 573  ttttcattcttccacattattatgactacctgtgaaccccttggaggtctgtgtgcctcc 632
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  ttttcattcttccacgttattatgactacctgtgaaccccttggaggtctgtgtgcctcc 591

                                                  
Query: 633  ccaagtatgcagcaacttccatctttacacctcctgac 670
            ||||||||||| | ||||||||||| ||||||||||||
Sbjct: 590  ccaagtatgcatcgacttccatctt-acacctcctgac 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space:   700660
Effective search space used:   700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no453_n22.g1 MSMg01no453_n22.g1 CHROMAT_FILE:
MSMg01no453_n22.g1 PHD_FILE: MSMg01no453_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:53 2005
         (641 letters)



>mm_chr5_78219970_78221010
          Length = 1041

 Score = 1065 bits (551), Expect = 0.0
 Identities = 599/641 (93%), Gaps = 40/641 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatttaacagggccatatgcataatccccaaagctgttacttctatagctctaggatat 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 atatttaacagggccatatgcataatccccaaacctgttacttctatagctctaggatat 260

                                                                       
Query: 61  tcaggtaataaaacaaatattgacttagtgttttctccagggatggtatactcctaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggtaataaaacaaatattgacttagtgttttctccagggatggtatactcctaagtc 320

                                                                       
Query: 121 ctggggcacactggtcaccacagcctagggaaaatgcagtgcttagtttgatagccaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ctggggcacactggtcaccacagcctagggaaaatgcagtgcttagtttgacagccaaac 380

                                                                       
Query: 181 aaagcagtgttggattgttccaagatgagagcattttctcaaataaggcagtccatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcagtgttggattgttccaagatgagagcattttctcaaataaggcagtccatgaaa 440

                                                                       
Query: 241 gtaccctacctgtaaggttatagtagcagaaagggctgggagactcatttttgagccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaccctacctgtaaggttatagtagcagaaagggctgggagactcatttttgagccttt 500

                                                                       
Query: 301 tatttatctaaaaggcacagttatggaataaatttgtaggtagtttcaaactccaagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttatctaaaaggcacagttatggaataaatttgtaggtagtttcaaactccaagatt 560

                                                                       
Query: 361 tccctttatggggaccagtgggagacaaggtttctaagagctgagtgctttgaaacgttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccctttatggggaccagtgggagacaaggtttctaagagctgagtgctttgaaacgttg 620

                                                                       
Query: 421 ctttcttgggcaagaggtattgccttattttatggagagtgcatttctgataataaaccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcttgggcaagaggtattgccttattttatggagagtgcatttctgataataaaccg 680

                                                                       
Query: 481 agtgttcttacagtatttatttatttatttatttatttatttatttatttatttatttat 540
           |||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct: 681 agtgttcttacagtatttatttatttatttatttatttatttattta------------- 727

                                                                       
Query: 541 ttatttatttatttatttatttatttagcacaaaatactgaagtcctaagagcagctatg 600
                                      |||||||||||||||||||||||||||||||||
Sbjct: 728 ---------------------------gcacaaaatactgaagtcctaagagcagctatg 760

                                                    
Query: 601 gacttcttggttttataattgagtacaatctccttaggagc 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gacttcttggttttataattgagtacaatctccttaggagc 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)