Query= MSMg01no454_a07.b1 MSMg01no454_a07.b1 CHROMAT_FILE:
MSMg01no454_a07.b1 PHD_FILE: MSMg01no454_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:04 2005
(232 letters)
>mm_chr5_24568187_24568822
Length = 636
Score = 369 bits (191), Expect = e-107
Identities = 224/237 (94%), Gaps = 6/237 (2%)
Strand = Plus / Plus
Query: 1 tgagctccttgtgactctgcctcccagtgccttacagcacgct-ctgcccagcccccacc 59
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 201 tgagctccttgtgactctgcctcccagtgccttacagcacgctgc-gcccagcccccacc 259
Query: 60 agtttctttctctctctcttttgcatgggttctggagatgaagctcaggtgaccaggttt 119
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 260 agtttctttctctctctcttttgcatgggttctggcgatgaagctcaggtgattaggctt 319
Query: 120 acacagtaaacacttcact----gagtcatttccccaccccactccctcagacgtttcct 175
||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 320 acacagtaaacacttcactaactgagtcacctccccaccccactccctcagacggttcct 379
Query: 176 caagaataaggaaaacaagcgtctgagaagctgagttaccatggtcactgtgatggg 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caagaataaggaaaacaagcgtctgagaagctgagttaccatggtcactgtgatggg 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 636
Length adjustment: 9
Effective length of query: 223
Effective length of database: 627
Effective search space: 139821
Effective search space used: 139821
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no454_a07.g1 MSMg01no454_a07.g1 CHROMAT_FILE:
MSMg01no454_a07.g1 PHD_FILE: MSMg01no454_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:05 2005
(244 letters)
>mm_chr5_24747357_24748001
Length = 645
Score = 437 bits (226), Expect = e-127
Identities = 238/242 (98%), Gaps = 2/242 (0%)
Strand = Plus / Minus
Query: 5 aactggaagctgggtgtggcagtgtatacgtccagcactcaggaggcagaggcagg-cag 63
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 563 aactcgaagctgggtgtggcagtgtatacgtccagcactcaggaggcagaggcaggacag 504
Query: 64 atctctgagttccaggacagccaagctacacagagaaaccctgtctcaataaacaaaaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atctctgagttccaggacagccaagctacacagagaaaccctgtctcaataaacaaaaca 444
Query: 124 aaaatattcaaatacacaaatcattgtagg-aaaaaaaaatgaagctgtaaccaaacaaa 182
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 443 aaaatattcaaatacacaaatcattgtaggaaaaaaaaaatgaagctgtaaccaaacaaa 384
Query: 183 ttcctcagaaaaaaaagcaagaccaaagcaggaagattaaagaaacagtgaaaacccagg 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 ttcctcagaaaaaaaagcaagaccaaagcagggagattaaagaaacagtgaaaacccagg 324
Query: 243 gc 244
||
Sbjct: 323 gc 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
