Query= MSMg01no454_g01.b1 MSMg01no454_g01.b1 CHROMAT_FILE:
MSMg01no454_g01.b1 PHD_FILE: MSMg01no454_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:33 2005
(448 letters)
>mm_chr5_92632461_92633308
Length = 848
Score = 804 bits (416), Expect = 0.0
Identities = 440/454 (96%), Gaps = 12/454 (2%)
Strand = Plus / Plus
Query: 1 tcatatttacctacctgccttaactctccagcaccaggtctgtatgtgttctgccatgtt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tcatatttacctacctgccttaactctccagcaccaggtctgcatgtgttctgccatgtt 260
Query: 61 ccccacaataaagataatagattaaacctctgaaaccataagccagcacccgttaaatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ccccacaataaagataatagattaaacctctgaaaccataagccagcacccattaaatgc 320
Query: 121 tttccttattaagaggtgctgtggtcatggtgatgcttcacagaaatggagcacgaacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccttattaagaggtgctgtggtcatggtgatgcttcacagaaatggagcacgaacta 380
Query: 181 agacaggccttgttctgccctgcagaactcatcttcattgccaaagcaaaactcattgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacaggccttgttctgccctgcagaactcatcttcattgccaaagcaaaactcattgat 440
Query: 241 tc---ttttttt---agcactgaggatacagaggggaagacaaaagccctgtttaactta 294
|| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagct------ccaagcactgaggatacagaggggaagacaaaagccctgtttaactta 494
Query: 295 cattctagagtaagtaccaataaatacagtcaagtgctctgtagcttttggaaagaagtc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cattctagagtaagtaccaataaatacagtcaagtgctctgtagcttttggaaagaagtc 554
Query: 355 tgcatgttgttcagaattggatgagaagccagaagagtgattagatacacgactctccat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgcatgttgttcagaattggatgagaagccagaagagtgattagatacacgactctccat 614
Query: 415 agatcccatctctcctatgttgagaattgtctgg 448
||||||||||||||||||||||||||||||||||
Sbjct: 615 agatcccatctctcctatgttgagaattgtctgg 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_g01.g1 MSMg01no454_g01.g1 CHROMAT_FILE:
MSMg01no454_g01.g1 PHD_FILE: MSMg01no454_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:33 2005
(403 letters)
>mm_chr5_92791863_92792669
Length = 807
Score = 723 bits (374), Expect = 0.0
Identities = 398/408 (97%), Gaps = 6/408 (1%)
Strand = Plus / Minus
Query: 1 ctgatactgcctgaagattgctggtctataaatgctcctcagactcctcaggttcagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctgatactgcctgaagattgctggtctataaatgctcctcagactcctcaggttcagcct 450
Query: 61 t----cctgccattgctctctg-aaagagagatctccaaagcccaggcagagagctgcag 115
| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcctgcctgccgttgctctctgcaaagagagatctccaaagcccaggcagagagctgcag 390
Query: 116 cagctgctgagatgaacaggaaggtcacagccatagccctggctgcgatcatctgggcca 175
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 389 cggctgctgagatgaacaggaaggtcacagccatagccctggctgcaat-atctgggcca 331
Query: 176 cagctgctcaaggtatttggtgcccgtagcttctgagtctgtctgttccttgtgttactt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cagctgctcaaggtatttggtgcccgtagcttctgagtctgtctgttccttgtgttactt 271
Query: 236 ttcatatatctttttctctaaaatatacagttttaaaaatttactttatttcacatatta 295
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttcaaatatctttttctctaaaatatacagttttaaaaatttactttatttcacatatta 211
Query: 296 gaagttctaaggggagggtatagggaactttcgggatagcatttgaaatgtatataaaga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaagttctaaggggagggtatagggaactttcgggatagcatttgaaatgtatataaaga 151
Query: 356 aaatatctaataaaaaataaataattaaaaaaagaagttctagcaatg 403
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aaatatctaataaaaaataaataattaaaaaaagaagttctagcaatg 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 807
Length adjustment: 9
Effective length of query: 394
Effective length of database: 798
Effective search space: 314412
Effective search space used: 314412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
