BAC Information

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BAC

Clone NameMSMg01-455L24
Chromosome5 (Build37)
Map Location 22,503,803 - 22,666,302
singlet/doubletdoublet
Overlap geneLhfpl3, LOC100042101
Upstream geneReln, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, EG625219
Downstream geneLOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455L24.T7 (MSMg01no455_l24.b1)MSMg01-455L24.TJ (MSMg01no455_l24.g1)
ACCAG542216AG542217
length744753
length of high quality
(start - end)		467 (66 - 532)430 (75 - 504)
definitionCHROMAT_FILE: MSMg01no455_l24.b1 PHD_FILE: MSMg01no455_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:20 2005CHROMAT_FILE: MSMg01no455_l24.g1 PHD_FILE: MSMg01no455_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,503,803 - 22,504,269)(22,665,873 - 22,666,302)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACAAATTACCCAGTGGGGGGCCATTCCTATTCAGACCACCACCCA
GAGGAAGAATAATTTTCTTAGAGGAACCACTTAATGATATGCTTTTAACT
AAAAAGTAAAGGAAACAGGGAAAGTGGCAAAGCAAGATTAATGGAGGGTT
ATCTTTTCCTTCTTTGCCTATTGAAATTTTTTGGGATATGTCTTCAGTTT
GCTACATATGAGACCTATTTATTTCCAAAGAATTTATTAAATGGCAAGAG
AAGGAAAATGTCTTGGATCACATATATTTTTAATTAAGTATTTTCTTCAT
TTACATTTCCAATGCTATCCGAAAAGTCCCCCAAACCCTCCCCCCCACTC
CCCTACCCACCCACTCCCACTTCTTGGCCCTGACATTCCCCTGTACTGAG
GCATTTAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAGTGATGGCCGA
CTAGGCCATCTTCTGATACATATGCAGCTAGAGACACGAGCTCTGGGGGA
TACTGGTTAGATTATATTGGTGTTCCCCTATAGGGGTGCAGATCCCTTTG
GCTCCTTGGGTACCTTCTCTAGCTCCTCCATTGGGGGGCCCGTAACCCTC
CAATAACTGACTGTGGGGACCAACTCCGGGGTTGTTAGAGCCCCGCCTTA
CCCCCCAAAAAAAAGTTATTCTGGGCCCTTCCTCCAAAAATTTG

CGATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGAGAAGGGGATTTGGGAATTAGTA
GAAACTATTTTGGATAGTTTATATGAGGTAAGGCTATGCAGATTCTCATC
AATTGATGCTTTAAAATATGTTCTTCAAAACTTGGATTGAATTCAGAAGT
AACTGGATATCCAGGTTAGTGTATGGAGCCCTGGAGAAGACATTCTCTTT
TGTGTGTAACACACCAATGTGCCACCAGTGACTTGGTTCTTAATTTCAAA
GAAGCTTGAAAGTTTCCTATTAATGATCAATGGAAAAATCTGGGAACCCA
GAGACAAATCTGCTTAGCTGGCAAACTCTATCCTATATAAGATTAATTTA
TGTCTTCCTTGCAGAGAAGTAGCGAAAGAAGATGTGATTCATAAGCAACT
GGATATTGATGTCTTGTTAAAGGCAGCATTCCTCTACCAAGCTGTGTGAG
GAGGAATTGTCTTGACCAACATCTATTTGGTGAGCTCAGCTCTGGCAAAG
ATTCCTGTTGAAGGCCGACAGAACAGTGAAAAATCTTGTCTACAAAAAAA
GGGTAACTTTGGGTAATTGGCTCCCTGCCTGAATAGAAATGTTTATATTC
TTCTAAACCTCTCTAAAATACCCAATGGTGTACCGTGGAAATTTTCTGAT
ACGTCTTATTTATCTCTTCTCCTACTTTTACTTTGATTGTTATTTTTCGC
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_l24.b1 MSMg01no455_l24.b1 CHROMAT_FILE:
MSMg01no455_l24.b1 PHD_FILE: MSMg01no455_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:20 2005
         (467 letters)



>mm_chr5_22503603_22504469
          Length = 867

 Score =  903 bits (467), Expect = 0.0
 Identities = 467/467 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtggggggccattcctattcagaccaccacccagaggaagaataattttcttagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtggggggccattcctattcagaccaccacccagaggaagaataattttcttagagga 260

                                                                       
Query: 61  accacttaatgatatgcttttaactaaaaagtaaaggaaacagggaaagtggcaaagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accacttaatgatatgcttttaactaaaaagtaaaggaaacagggaaagtggcaaagcaa 320

                                                                       
Query: 121 gattaatggagggttatcttttccttctttgcctattgaaattttttgggatatgtcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattaatggagggttatcttttccttctttgcctattgaaattttttgggatatgtcttc 380

                                                                       
Query: 181 agtttgctacatatgagacctatttatttccaaagaatttattaaatggcaagagaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttgctacatatgagacctatttatttccaaagaatttattaaatggcaagagaagga 440

                                                                       
Query: 241 aaatgtcttggatcacatatatttttaattaagtattttcttcatttacatttccaatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgtcttggatcacatatatttttaattaagtattttcttcatttacatttccaatgc 500

                                                                       
Query: 301 tatccgaaaagtcccccaaaccctcccccccactcccctacccacccactcccacttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatccgaaaagtcccccaaaccctcccccccactcccctacccacccactcccacttctt 560

                                                                       
Query: 361 ggccctgacattcccctgtactgaggcatttaaagtttgcaagaccaatgggcctctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccctgacattcccctgtactgaggcatttaaagtttgcaagaccaatgggcctctctt 620

                                                          
Query: 421 tccagtgatggccgactaggccatcttctgatacatatgcagctaga 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccagtgatggccgactaggccatcttctgatacatatgcagctaga 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no455_l24.g1 MSMg01no455_l24.g1 CHROMAT_FILE:
MSMg01no455_l24.g1 PHD_FILE: MSMg01no455_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:21 2005
         (430 letters)



>mm_chr5_22665673_22666502
          Length = 830

 Score =  816 bits (422), Expect = 0.0
 Identities = 428/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagaaggggatttgggaattagtagaaactattttggatagtttatatgaggtaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctgagaaggggatttgggaattagtagaaactattttggatagtttatatgaggtaaggc 571

                                                                       
Query: 61  tatgcagattctcatcaattgatgctttaaaatatgttcttcaaaacttggattgaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tatgcagattctcatcaattgatgctttaaaatatgttcttcaaaacttggattgaattc 511

                                                                       
Query: 121 agaagtaactggatatccaggttagtgtatggagccctggagaagacattctcttttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agaagtaactggatatccaggttagtgtatggagccctggagaagacattctcttttgtg 451

                                                                       
Query: 181 tgtaacacaccaatgtgccaccagtgacttggttcttaatttcaaagaagcttgaaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgtaacacaccaatgtgccaccagtgacttggttcttaatttcaaagaagcttgaaagtt 391

                                                                       
Query: 241 tcctattaatgatcaatggaaaaatctgggaacccagagacaaatctgcttagctggcaa 300
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tccgatgaatgatcaatggaaaaatctgggaacccagagacaaatctgcttagctggcaa 331

                                                                       
Query: 301 actctatcctatataagattaatttatgtcttccttgcagagaagtagcgaaagaagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 actctatcctatataagattaatttatgtcttccttgcagagaagtagcgaaagaagatg 271

                                                                       
Query: 361 tgattcataagcaactggatattgatgtcttgttaaaggcagcattcctctaccaagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgattcataagcaactggatattgatgtcttgttaaaggcagcattcctctaccaagctg 211

                     
Query: 421 tgtgaggagg 430
           ||||||||||
Sbjct: 210 tgtgaggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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