BAC Information

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BAC

Clone NameMSMg01-456K18
Chromosome5 (Build37)
Map Location 115,756,014 - 115,756,257
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1
Downstream geneSfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456K18.T7 (MSMg01no456_k18.b1)MSMg01-456K18.TJ (MSMg01no456_k18.g1)
ACCAG542919AG542920
length788835
length of high quality
(start - end)
273 (71 - 343)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no456_k18.b1 PHD_FILE: MSMg01no456_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:34 2005CHROMAT_FILE: MSMg01no456_k18.g1 PHD_FILE: MSMg01no456_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCCAAATTTGCGGCGCTAGANGAAGCACCATACAAAGAGGAGCCGCNG
GAATCACTCTTACCACAGACTGGCCTCGAATTCAAGGGGATCTTCCTGCC
TCTGCCGCCCATGTGCTGCGATTAAGGGCGTGTAACACCACCAACACCGC
CACCACCGCCACCACCACCACTACCACCATCACCGCCTTGCCTCGCTAAT
ATTCAGCTTTTTAACACAGGGTCTTGTTATGCATATCAGGCTGACTGGCA
GCTCACTTTGTAGCCCAATCTGGCTTTGACTTTGTAATCTACCTGCCTTT
GCCTTCCGTGTTTTTTTCTAATGTATAAACGTTATTTGTGTAGATGTGTG
TACTGTATGTATGTATACGGGAGGATACAACCACACTTTTTTCTTTCTCT
ATTTCCTTGTCCCCCACCTTATTCTCACTTCTTCTTTTCTTTTTTACTCT
TTTTATTTATCCTCCCCCCACACCCATTTTTTATACCAACCACTATCTTT
CACCCCTCCCTTTTTTCCCCTTATCATTTCCTTTTTTTTTTTTTTTTAAT
CCCCTCTTTCCTTTTCATTCTTCTCTTTTTCCCCCCCACCCTCTCATTTT
TCCTTTCTCTCCCTTCCCTTTTTCTTTTCTCTCCCCTCATTTTCCTCTCT
TTCTACTACCTTATCTGATCTTCCCTCCACTCTTCTTTTATCATATTTCC
CCCCCATCCCCTTTCTACCTTTTTACTATATTACACTCCTCCTCTTCAAT
ACCTTTCCCTTTATTTTTTATTCTCCCCACATTTCCTN
TTACCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCATGGGGATGGCTTTAC
CCACCAAGCCATCTCCGTAAGAATGTTCAAATCGGGGCATCAGCATACTG
AGAGGATATTCTGCCAGTAATCTATATTCCTAATACATTCTCAATAATGT
ATTTTTATTTTTAAAAACTTTAGCCCAGTGGGATGGCCCACACAGTTTAT
CCTATTACTCAGGAGACAGAGGCTGGTGGATCTCTCTAAGTTCAAGGTCA
GCTTGGTCTACAGAGTGAGTTCCTGGATATGCAGGGTTATGAAGAGAGTC
TGTAGTGATATTTTTTTCCCTCTTTACTTTATGCGTAGGTATATTTTTGT
CTTTCCTGTCCTTCTTTACTACCCCCCCCCTAGCGTCTTTTCCTCTCTTA
TCGTTCGTTTTCCTTTCTTTTTCCGGTTTCTTTTTATCCTTTTAGTCTGC
CTTTTTTTTTGGTTCCTTATTTTCATTTTTTCCTTCCCATTTATTTCCTT
TCTCCTTTTCCTTATCTTTACACTTTATCTTTTTTCCTTGTTGTTTTCTC
CCCATTATCATTTCTCTTCTTTCTCTTTTTTCTGCCCTGCTTTTTTCCCT
TCCTTTTTCCTTTTTCTTTACCCCCCCTCCGTCTAGCGCCCGCCCTTTCT
TTCTTTATTGTTCTTCTCTTTTCTCCACCCTCTTCCATTTCCCTCCCTAC
TTTTTTTCCTTCTTTCCCTCTTTCTTTCCTCCCTTCTTGTTCCTTTCCGT
TTTTTATTTTCCTTCCTCTTTATTTCTTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_k18.g1 MSMg01no456_k18.g1 CHROMAT_FILE:
MSMg01no456_k18.g1 PHD_FILE: MSMg01no456_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:34 2005
         (244 letters)



>mm_chr5_115755814_115756457
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcatggggatggctttacccaccaagccatctccgtaagaatgttcaaatcggggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcatggggatggctttacccaccaagccatctccgtaagaatgttcaaatcggggca 260

                                                                       
Query: 61  tcagcatactgagaggatattctgccagtaatctatattcctaatacattctcaataatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagcatactgagaggatattctgccagtaatctatattcctaatacattctcaataatg 320

                                                                       
Query: 121 tatttttatttttaaaaactttagcccagtgggatggcccacacagtttatcctattact 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 321 tatttttatttttaaaaactttagcccagtgggatggcccacacagtttatcctagcact 380

                                                                       
Query: 181 caggagacagaggctggtggatctctctaagttcaaggtcagcttggtctacagagtgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggagacagaggctggtggatctctctaagttcaaggtcagcttggtctacagagtgag 440

               
Query: 241 ttcc 244
           ||||
Sbjct: 441 ttcc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)