BAC Information

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BAC

Clone NameMSMg01-456L10
Chromosome5 (Build37)
Map Location 78,681,575 - 78,681,822
singlet/doubletsinglet
Overlap geneLOC100039398
Upstream geneRest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneMthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456L10.T7 (MSMg01no456_l10.b1)MSMg01-456L10.TJ (MSMg01no456_l10.g1)
ACCAG542951AG542952
length730756
length of high quality
(start - end)
481 (70 - 550)248 (74 - 321)
definitionCHROMAT_FILE: MSMg01no456_l10.b1 PHD_FILE: MSMg01no456_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:37 2005CHROMAT_FILE: MSMg01no456_l10.g1 PHD_FILE: MSMg01no456_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTTTCCGTTCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTT
TGATCCATTTAGATTTGACCTTAGTACAAGGAGGTAAGTATGGATCGATT
CGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGGTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCA
AGTGACAATAGGTGTGTGGGTTCATTTCTGGGGCTTCAATTCTATTCCAT
TGGTCTACTTGTCCGGCTCTATACCAGGACCATGCAGTTTTTTACCCATT
TGCTCTGCAATAAATGTTTATTTTCATGTTCGGGTGATCCTCCCTAATGC
TCTTTTTTCTCTTTTAAAAGAATTTTGGTN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGAAAATCCTTTTGCTTACCCGATTTTCTACTTTC
TACTCTACTCATTCCTATATGCCATAGGTTTATTGAATTGACAGGTGATC
TATCCATCCAATACACAAGATATTCTCCCTACAGTGGGTAGAGCTGATGT
TCCCAAGAGTCTCCAGTCCTAGCTGAGTTTTGGCAATTGAAAACTTCTGG
GTATTTCAAGCCGTTTCTCTCTATAAATGTGGCTGCGGGTAGGTTGTCTG
TGGCCCAGTAGATAGCCTTTAATCCTTTCAGAATAAGTTGGGGCCATATA
CAAAGGTATATCATAGTCAAATCAAGACAGCCAGGCCCAAGAGCTGATGA
TCAAACACATCAGATCGACACACGTTTGTGATACTTTCATTTGAACTCCA
TAAACAGGACAATTAGTGCTGTGATTGCAACAGTCTCCACCAACTTGTTG
CCTCAGCATCTAGTGTACTCAGCATGGAACCATCAGAGAGAGAACTTCTG
ATGATCCCAGTGTCCTCAGCTTGACTCTGTCACCCATTCGGGCCTGCTCT
TTCCCTTTATCAAATCCGTATTTCTGCATCTTCCCTCTGAAACTCTTCTC
ATTTTTTTTTTTTATCTAAACCCTGGTCCCTTTGCCTATCCTGAAGCTTA
TTCCTTCCTCCGCATTTGTTTCTCTTTTTTCTTGTTAACTTTTTCCGCTC
TTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_l10.g1 MSMg01no456_l10.g1 CHROMAT_FILE:
MSMg01no456_l10.g1 PHD_FILE: MSMg01no456_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:38 2005
         (248 letters)



>mm_chr5_78681375_78682022
          Length = 648

 Score =  449 bits (232), Expect = e-131
 Identities = 244/248 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttgcttacccgattttctactttctactctactcattcctatatgccataggtttat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cttttgcttacccgattttctactttctactctactcattcctataggccataggtttat 260

                                                                       
Query: 61  tgaattgacaggtgatctatccatccaatacacaagatattctccctacagtgggtagag 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tgaattgacaggtgatctatccatccaatacacaagatattctccctaaagtgggtagag 320

                                                                       
Query: 121 ctgatgttcccaagagtctccagtcctagctgagttttggcaattgaaaacttctgggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatgttcccaagagtctccagtcctagctgagttttggcaattgaaaacttctgggta 380

                                                                       
Query: 181 tttcaagccgtttctctctataaatgtggctgcgggtaggttgtctgtggcccagtagat 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcaagccgtttctctctataaatgtggctgcgggtaggttgtctgtggcccagtagat 440

                   
Query: 241 agccttta 248
           ||||||||
Sbjct: 441 agccttta 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)