BAC Information

Click to search

BAC

Clone NameMSMg01-456M07
Chromosome5 (Build37)
Map Location 4,239,785 - 4,240,137
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream geneFzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456M07.T7 (MSMg01no456_m07.b1)MSMg01-456M07.TJ (MSMg01no456_m07.g1)
ACCAG542992AG542993
length793797
length of high quality
(start - end)
356 (50 - 405)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no456_m07.b1 PHD_FILE: MSMg01no456_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:42 2005CHROMAT_FILE: MSMg01no456_m07.g1 PHD_FILE: MSMg01no456_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTATTTGCCATTCATTAGGGTCACGGGAGAGCATGCAGGCT
ATTGTGGTGGGTGAAGCCAGTAGCAGGAAAGAGGGCCAAATGGGCTCTTT
GTCATCAACTCCTGAATGGATTTTTTAAGAAGTCTTTTTATTAGAGTGGT
CACATTACAGGTAGTGATTTTTCAAGTCTAGGAATGTAATGGAGGAAGAG
ACAAATTTCCAAATGTCTGTAGCATTTCTCAGGTAGATTAGTCCTTAAAT
ATTATGAAGAGGAGACTGAGGTTTTGGGAAGGTAACTTACAAATACCATG
AGTGATAAATTTGAATTTGAATTCTTATACTGGCTGATTATTTCTTTTCA
CCATAGTGCACTTGGCACGATCTGTGGGAGAGGATTCCCTCGCCTATTAT
TCCCTTTATCCCTTGTCTGCCGATGTATTCTTTTTGTTTATCTTATCTAA
ACGCTCCACCTGCCTTATTGTATATCGTTTTTTCTCTTTCTGATCCCATA
CCTCCTTTTTTCCCTTATATTTAGCTCTTCCTTCCCCCGCTCTCCCCTTC
TTCCTCCCCTTTTTCCACTTTTTATATTTCTTCCCACCCTTATTTTTTTT
TTTCCTTTTCTTTTTCTCTCTTTTTTCCCCCTTTTCTTTCTTCTTTAATT
TATTCCCTTGCCCCCCTTTTCCCTCCTCCTTCCCTATTCCTCCGTTCTCC
CTATTTTCCTGTACCCCCTCTTTTTTCTCTTTTCACACTCCCG
TTAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATTTAGG
GAAGGTGCGAACAAGTTTCTGATATGAGATCATGTTTGTCATCTGGAGCC
ATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAA
TTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCAT
GGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTT
ACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTA
CGCATTCACTGCATGCAGCATTGTTTTTTACCTGAGCGATGGCGCGATGG
AAGATGCTCTGTACGATATCGCCTCCATGCGTCTGTTTGCCCGGCTATCC
CTGGATAGCGCCTTGTCGCACCGCCCCTTTATCATGAATTTTTCGCCTCC
CGTCTGGTATATCATTTTCCTGGTCCCGTCCTACTGCTCTTTGACTATTT
ATTCGCTGCCCCGTTCTTATATTTCTCCTCATGCTTGTTTCCTTGTTTCT
CTCTTTTTTATTTTCTCCTTCCTTCTTTTTTTTCCACTCCTCCTTCCCCT
ATCCTTCTTCTTTCCTCCTAAATCCCATTATATTTTTTTTTCCCTCTCAC
TTATCTCCACTTTTCTTTATTTTCTATCCTTTTTCTCTTTTTTCTCTCTT
CTCACACTCCCCCCTATCTATTTTATTTACCTATCTTCCTCTCCTCTTAC
ATTCCCACTTTTACTCCTCTTCTCTTCTACCCACTTTTCTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_m07.b1 MSMg01no456_m07.b1 CHROMAT_FILE:
MSMg01no456_m07.b1 PHD_FILE: MSMg01no456_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:42 2005
         (356 letters)



>mm_chr5_4239582_4240337
          Length = 756

 Score =  613 bits (317), Expect = e-180
 Identities = 344/353 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatttgccattcattagggtcacgggagagcatgcaggctattgtggtgggt 63
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctatctgtcattcattagggtcacgggagagcatgcaggctattgtggtgggt 263

                                                                       
Query: 64  gaagccagtagcaggaaagagggccaaatgggctctttgtcatcaactcctgaatggatt 123
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 264 gaagtcagtagcaggaaagagggccaaatgggctcttggtcatcaactcctgagtggatt 323

                                                                       
Query: 124 ttttaagaagtctttttattagagtggtcacattacaggtagtgatttttcaagtctagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttaagaagtctttttattagagtggtcacattacaggtagtgatttttcaagtctagg 383

                                                                       
Query: 184 aatgtaatggaggaagagacaaatttccaaatgtctgtagcatttctcaggtagattagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 aatgtaatggaggaagagacaaatttccaaatgtctgtagcatttctgaggtagattagt 443

                                                                       
Query: 244 ccttaaatattatgaagaggagactgaggttttgggaaggtaacttacaaataccatgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccttaaatattatgaagaggagactgaggttttgggaaggtaacttacaaataccatgag 503

                                                                
Query: 304 tgataaatttgaatttgaattcttatactggctgattatttcttttcaccata 356
           ||||||||||||||||||||||  |||| ||||||||||||||||||||||||
Sbjct: 504 tgataaatttgaatttgaattcaaatacaggctgattatttcttttcaccata 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)