BAC Information

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BAC

Clone NameMSMg01-457G10
Chromosome5 (Build37)
Map Location 23,171,140 - 23,171,304
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457G10.T7 (MSMg01no457_g10.b1)MSMg01-457G10.TJ (MSMg01no457_g10.g1)
ACCAG543477AG543478
length829820
length of high quality
(start - end)
169 (75 - 243)176 (72 - 247)
definitionCHROMAT_FILE: MSMg01no457_g10.b1 PHD_FILE: MSMg01no457_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:35 2005CHROMAT_FILE: MSMg01no457_g10.g1 PHD_FILE: MSMg01no457_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCTACAGGATCCGCGG
AATTCTTGTGTTATCTTTAACATGATACATGTATTAAGCGCGACTTAATA
AGTAATAACTTTAGGACTCTTGCCACTCATCTTTGCTCTCCTGTGGCTTC
CTGAGCCTTGCCTAGTACTCGGGCCTAGAATTTTTATATGGATGTTGATT
ATATAGGACATTATTAAGTTTTGGTTATGGTTTTAACTGCCAAAGTTTTT
TTTTTATTTTCTTCACACGTTTTTGGCTAGCTCTGACTGTTTACTTTTTC
TTCTACATCTTTTTCATATTTTCTCACACTACTACCATTACTATTTTTAT
TCTTTTTTACTCTCTCGCTTGTTCTCTACTTGTATGCCTGATTTTTCTTA
TTTTTTGTATTACCCCTCCTTCTCCTTCCTTCTTTTCCTTTTTTTTCCTT
TTCTTCCCTTTCTCTTTCCTTTTTTTTCTTTCTTTTTTTTTTTCAATTTT
GTTCTCTCTCTTTTTCCTATTTTCGTCTATCTTCTTTCTTCCTTTCATTC
TCTTTTATCTTACCTTTCTCCTCTCTCCTCCTCTTTTTTTTTTTTCCCTC
CTCTATCTCTTTTTTCTCTCCCTTTTTCTCATCTTTCCTCTTTTCTGTCT
ACCTTTCATTCCTCTTCCTCCTCCATTTTCCCTCCCTTTTTTCTTTTTTT
TACATACCTTCTCTATATTTCTTCCCATTCTCCTCTTATCGCTCCTTCTT
TCTTTTTCCTTTACACCCATTATTTTCACCTTTTCTTTTTCTTCTTTTCT
TTCTCTACCTTCTTTCTTTTCCCCTTTTT
NNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGAGAAATTCCTTATGTATTTTGTAGTCTTTTGGGT
TATAAACATTTTAATTAATTGCCTACTATATTTTTTTACTTTTTTTACTT
TTTTTTTTTTTATTTTTTATGGGGGGGGGACAGTGTATATCACATGTGTA
TGGATGCTGGAGGCCAGAAGAGGATGTTGTAGCTGGAGCTGGGTTGGGTT
TTTTTTTTCTANGGGNGCTAGAAAGCAAATTTGGTGTCTCTGAATAAACA
AGTGCTCGTAACCGCTTTTTCCCTGGCTCTTACAGACAACACAGTTCACG
CAACAGACTTTTTTTTCCCCCCCCCCCCTTTTAGGGGTTGTATTATCGGA
TCTATTTATAGTTTAGCCCCCCCCCCTTTTTTTATTGTTACTCTATTTTT
TCCCACTCTCCCATATCATTTTTTCTCTTCTTCCCCCGTTTGTTAATTTA
GCCGGCTCTTCTCGCCCTTTTTTTTTCTTCCTTCTCGCTTTTTTTTGGCC
CCTCCTCTCTTTTCGCTCTTTCCCTCCTCGTTTCTTTACCCTCCTTTTAG
CGCATGTGCTTTTCGCTCTTCCTCTTTTTATCCATATTCTCCACCCCTTT
TCTCTCTCTCTGTTCCTTTTTTCTGCTCCCTGTTTTTTTTTCATGTGCGA
TTCCGGACTTTTTTTTTTTTTTTTTTTCCTTCTTTGCCCTTGCTCTTTGC
TCCCCTCTCTTGTTTCCCCCTTTTTTTCTTTTGTTTTTTTCCCTTTTTTT
TCCTTTTCTTGTGATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_g10.b1 MSMg01no457_g10.b1 CHROMAT_FILE:
MSMg01no457_g10.b1 PHD_FILE: MSMg01no457_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:35 2005
         (169 letters)



>mm_chr5_23170940_23171508
          Length = 569

 Score =  311 bits (161), Expect = 1e-89
 Identities = 164/165 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacatgtattaagcgcgacttaataagtaataactttaggactcttgccactcatcttt 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atacatgtattaagcgtgacttaataagtaataactttaggactcttgccactcatcttt 306

                                                                       
Query: 61  gctctcctgtggcttcctgagccttgcctagtactcgggcctagaatttttatatggatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gctctcctgtggcttcctgagccttgcctagtactcgggcctagaatttttatatggatg 246

                                                        
Query: 121 ttgattatataggacattattaagttttggttatggttttaactg 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttgattatataggacattattaagttttggttatggttttaactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)