Query= MSMg01no457_h22.b1 MSMg01no457_h22.b1 CHROMAT_FILE:
MSMg01no457_h22.b1 PHD_FILE: MSMg01no457_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:43 2005
(444 letters)
>mm_chr5_50276118_50276962
Length = 845
Score = 420 bits (217), Expect = e-121
Identities = 247/257 (96%), Gaps = 3/257 (1%)
Strand = Plus / Plus
Query: 190 tattacatta-tgttaataatttaaa-ttttttgagcacagtcatacccctcctcattgt 247
||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 390 tatta-attattgttaataatttaaatttttttgagcacagtcatacccctcctcattgt 448
Query: 248 cactgttctctctgtacctaaaatggatattggcctatcgtaacaattcagaaaatatat 307
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 449 cactgttctctctgtacctaaaatggatattggcctatcataccaattcagaaaatatat 508
Query: 308 gctgagttgcactgtcaaaaagccccatacatggaaattagtggggaatagaagaaatga 367
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 509 gctgagttgcattgtcaaaaagccccatatatggaaattagtggggaatagaagaaatga 568
Query: 368 tcataaacagccacagatacctggattagcaaattctgaattatttttaaacatcaactt 427
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 569 tcataaacatccacagatacctggataagcaaattctgaattatctttaaacatcaactt 628
Query: 428 ctacataagaattttcc 444
|||||||||||||||||
Sbjct: 629 ctacataagaattttcc 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space: 362390
Effective search space used: 362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_h22.g1 MSMg01no457_h22.g1 CHROMAT_FILE:
MSMg01no457_h22.g1 PHD_FILE: MSMg01no457_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:43 2005
(330 letters)
>mm_chr5_50292809_50293538
Length = 730
Score = 596 bits (308), Expect = e-175
Identities = 325/331 (98%), Gaps = 2/331 (0%)
Strand = Plus / Minus
Query: 1 gatgacatctg-gtagtcaggtccaagaagggaaaaatgttgtgaaactcaaaacagaag 59
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 530 gatgacatctgag-agtcaggtccaagaagggaaaaatgttgtgaaattcaaaacagaag 472
Query: 60 tggctgataaagaaaatattggaagtacagttgagaaaaactgcattccattaaaagctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tggctgataaagaaaatattggaagtacagttgagaaaaactgcattccattaaaagctg 412
Query: 120 gagaagtaaccagctcagaaatacataacttgaaggataatattctagccctacagttat 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 411 gagaagtaaccagctcagaaatacataacttgaaggataatattctagccgtacagttat 352
Query: 180 tattaatgagaaatgatttcccaggtcagactgtgacattagaccaggcatgtcaccata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tattaatgagaaatgatttcccaggtcagactgtgacattagaccaggcatgtcaccata 292
Query: 240 aagacaataaaaagatagaaatgactgcagagaaaccgaaacaagacactaacgtgtcta 299
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aagataataaaaagatagaaatgactgcagagaaaccgaaacaagacactaacgtgtcta 232
Query: 300 anaaatgagtgcttgactattatcctggcct 330
| |||||||||||||||||||||||||||||
Sbjct: 231 aaaaatgagtgcttgactattatcctggcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
