Query= MSMg01no457_m13.b1 MSMg01no457_m13.b1 CHROMAT_FILE:
MSMg01no457_m13.b1 PHD_FILE: MSMg01no457_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:08 2005
(517 letters)
>mm_chr5_5012757_5013668
Length = 912
Score = 841 bits (435), Expect = 0.0
Identities = 492/513 (95%), Gaps = 7/513 (1%)
Strand = Plus / Plus
Query: 6 gaattctttcc-atgtcattgacctgtgtttccactctcttcttatttaagctcacatta 64
||||||||||| | || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 206 gaattctttccaaggttattgacctgtgtttccactgtcttcttatttaagctcacatta 265
Query: 65 aacattgtggatttggaatacccacaccttcctgtttgtacataaaaataaactctctgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aacattgtggatttggaatacccacaccttcctgtttgtacataaaaataaactctctgc 325
Query: 125 tgtctgccttctgcctttcatcttgctcccataccctgcaagtccgactgaagccgacca 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 326 tgtctgccttctgcctttcatcttgctcccataccctgcaactccgactgaagccgacca 385
Query: 185 catcctacgtgtgcagagctgagcttgccggtggggtggggaggtatcagatacatggtc 244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 386 catcctacgtgtgcagagctgagcttgccggaggggtggggaggtatcagatacacggtc 445
Query: 245 aggactacctacagaatttttttttttacatctacttttcctagtttacataatttccag 304
|||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 446 aggactacctacagcatgtttttttt-acatctacttttcctagtttacataacttccag 504
Query: 305 aatacgatacttagaggacaaacctacactatagttcggttcagttggaacaaaatgatg 364
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 aatatgatacttagaggacaaacctacactatagttctgttcagttggaacaaaatgatg 564
Query: 365 tagttagcactgcagattttaaatgcttggctggctgagaggttgggacattcatttcta 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 tagttagcactgcagattttaaatgcttggctggctgagaggttgggccattcatttcta 624
Query: 425 atggatgtttcatatgacatcatctttctcaaaaacacttatgagtacactaatgaagct 484
||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 625 atggatgtttcat--gacatcatctttctcaaaaa---ttaagagtacactaatgaagct 679
Query: 485 gaaagaattatacttaatgaccatatagaaatt 517
||||||||||||||||| |||||||||||||||
Sbjct: 680 gaaagaattatacttaacgaccatatagaaatt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 912
Length adjustment: 10
Effective length of query: 507
Effective length of database: 902
Effective search space: 457314
Effective search space used: 457314
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_m13.g1 MSMg01no457_m13.g1 CHROMAT_FILE:
MSMg01no457_m13.g1 PHD_FILE: MSMg01no457_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:08 2005
(249 letters)
>mm_chr5_5103430_5104078
Length = 649
Score = 472 bits (244), Expect = e-138
Identities = 247/248 (99%)
Strand = Plus / Minus
Query: 1 acattttcacccttttttcctagcacactgatttatgtcagtacatggacaagcaccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acattttcacccttttttcctagcacactgatttatgtcagtacatggacaagcaccctg 389
Query: 61 gaggactccatccagataatgtgaaggtaagaaacagtattttaagaccgtgaggtttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaggactccatccagataatgtgaaggtaagaaacagtattttaagaccgtgaggtttta 329
Query: 121 tttttcatatgtgtatttttagcttaaatctaaaatcttctgtgtaaaggactaattatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttttcatatgtgtatttttagcttaaatctaaaatcttctgtgtaaaggactaattatt 269
Query: 181 attttaattggtgggaattgcagtgttttaacattaattttaatacagaaacattcagat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 attttaattggtgggaattgcagtgttttaacattagttttaatacagaaacattcagat 209
Query: 241 tgtttcgt 248
||||||||
Sbjct: 208 tgtttcgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
