GGGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGA
TCCGCGGAATTCTGATAGGCTTGCCTTTGTATGTTACTTGACCTTTTTCC
CTTACCGCTTTTAGTATTCTATCTTTATTTAGTGCATTTGTTGTTCTGAT
TATTATGTGTCGGGAGGAATTTCTTTTCTGGTCCAGTCTATTTGGAGTTC
TGTAGGCTTCTTGTATGTTCATAGGTATCTCTTTCTTTATATTTGGGAAG
TTTTCTTCAATAATTTTGTTGAAGATGTTTGCTGGTCCTTTGAGTTGAAA
ATCTTCATTCTCATCCACTCCTATTATCCGTATGTTTGGTCTTCTCATTG
TGTCCTGGATTTCCTGGATATTTTGAGTTAGGATCTTTTTGCATTTTCCA
TTTTCTTTGATTGTTGTGCCGATGTTCTCTATGGAATCTTCTGCACCTGA
GATTCTCTCTTCCATCTCTTGTATTCTGTTGCTGATGCTCAAATCTATGG
TTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAGTGTTGCCTCACTTTGA
GTTTTCTTTATTGTTTCTACTTCCCTTTTTAGGTCTAGTATGGTTTTGTT
CATTTCCATCACCTGTTTGTATGTTTTTTCCTCTTTTTCTGTAAGGACTT
CTACCTGTTTGATTGGGTTTTCCTGGTTTTCTTTAAGGACTTGTAACTCT
TTAGCAGTGTTCTCCTGTATTTCTTTAAGGGAATTATTAAAGTCCTT

CTTTCACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACTAACTTGGTTACTGCAT
ATCTACATTACTGATTAACCTAAGTTAATTTAATTGGCAAGTATATGTTT
AAAAATTAAGTGTATTAAAACTAAATGGATAGAGCTGATTTCTGAATAGA
AATATGTAATTTATGTGCATATATGCCAATATATGTATATCTTGTGTGTG
TTTATACAATAGAAATTAAAGATTAAGTAAGAATTAAGTTATAACTATCA
GACAGTAGTATCTTTTTCTTTATTATAAAAGCTGTTAAAGTGGAAAAATT
TAAGTGTAAACAAACTAAGAAAATTAGACTGATTTTACAAGGAATGTAGA
TTCGGTGGAACTTAGTAAAGTGTTTTGTTGTACTATTAATGTCATTGAAA
TGTACTAATAGTTTCTTTCAGAAGCACATTTTTAGCAGTATAATAAAAAT
TAAAAAATATTTAAAATATATTCAAAATACAATATGAAAAATTATAAATT
TTTTATGAAATAAAATATAAATAATAAACTTATTAAAATTAAGATCATAT
TTAGAATCCTCCAGAGGTTTCAAAATAAATTTATTAAAAACTTCATTACT
GGACATAACTCATGTCTCTAACCTAATTTTATAGCACTCTTCTTATGGGG
GTTCTCACCCAGTATAACTTGTGAACCTTTTTTCC

Query= MSMg01no458_a02.g1 MSMg01no458_a02.g1 CHROMAT_FILE:
MSMg01no458_a02.g1 PHD_FILE: MSMg01no458_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:27 2005
         (622 letters)



>mm_chr5_85098187_85099209
          Length = 1023

 Score = 1133 bits (586), Expect = 0.0
 Identities = 604/610 (99%), Gaps = 1/610 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactaacttggttactgcatatctacattactgattaacctaagttaatttaattggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttactaacttggttactgcatatctacattactgattaacctaagttaatttaattggca 551

                                                                       
Query: 61  agtatatgtttaaaaattaagtgtattaaaactaaatggatagagctgatttctgaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agtatatgtttaaaaattaagtgtattaaaactaaatggatagagctgatttctgaatag 491

                                                                       
Query: 121 aaatatgtaatttatgtgcatatatgccaatatatgtatatcttgtgtgtgtttatacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaatatgtaatttatgtgcatatatgccaatatatgtatatcttgtgtgtgtttatacaa 431

                                                                       
Query: 181 tagaaattaaagattaagtaagaattaagttataactatcagacagtagtatctttttct 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tagaaattaaagattaaataagaattaagttataactatcagacagtagtatctttttct 371

                                                                       
Query: 241 ttattataaaagctgttaaagtggaaaaatttaagtgtaaa-caaactaagaaaattaga 299
           |||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 370 ttaaaataaaagctgttaaagtggaaaaatttaagtgtaaatcaaactaagaaaattaga 311

                                                                       
Query: 300 ctgattttacaaggaatgtagattcggtggaacttagtaaagtgttttgttgtactatta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctgattttacaaggaatgtagattcggtggaacttagtaaagtgttttgttgtactatta 251

                                                                       
Query: 360 atgtcattgaaatgtactaatagtttctttcagaagcacatttttagcagtataataaaa 419
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atgtcattgaaatgtactattagtttctttcagaagcacatttttagcagtataataaaa 191

                                                                       
Query: 420 attaaaaaatatttaaaatatattcaaaatacaatatgaaaaattataaattttttatga 479
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 190 attaaaaaatatttaaaatatattcaaaatacaatatgaaaaattataaaatttttatga 131

                                                                       
Query: 480 aataaaatataaataataaacttattaaaattaagatcatatttagaatcctccagaggt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aataaaatataaataataaacttattaaaattaagatcatatttagaatcctccagaggt 71

                                                                       
Query: 540 ttcaaaataaatttattaaaaacttcattactggacataactcatgtctctaacctaatt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  ttcaaaataaatttattaaaaacttcattactggacataactcatgtctctaacctaatt 11

                     
Query: 600 ttatagcact 609
           ||||||||||
Sbjct: 10  ttatagcact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1023
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1013
Effective search space:   619956
Effective search space used:   619956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)