Query= MSMg01no458_f24.b1 MSMg01no458_f24.b1 CHROMAT_FILE:
MSMg01no458_f24.b1 PHD_FILE: MSMg01no458_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:57 2005
(455 letters)
>mm_chr5_121495860_121496714
Length = 855
Score = 671 bits (347), Expect = 0.0
Identities = 377/387 (97%), Gaps = 2/387 (0%)
Strand = Plus / Minus
Query: 70 aaacaaacaaacaaacaaacaaacataaaacatcattgcttgctgggaggcagtggtggt 129
||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 848 aaacaaacaaataaataaataaacataaaacatcattgcttgctggggggcagtggtggt 789
Query: 130 gcacacctttaatcccagcccttgggaggcagaggcaggtggatttctgagttcaaggcc 189
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gcacacctttaaccccagcacttgggaggcagaggcaggtggatttctgagttcaaggcc 729
Query: 190 agcctggtcttcagagtgagttccaggacagccaggactacacagagaaaccctgtctca 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agcctggtcttcagagtgagttccaggacagccaggactacacagagaaaccctgtctca 669
Query: 250 aaaaaccaaaa-cgaaacaaacaaaacccatcattgcctgtttggaaaacactaatcttt 308
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaaaaccaaaatc-aaacaaacaaaacccatcattgcctgtttggaaaacactaatcttt 610
Query: 309 catccaggttgatcacttctttctttacaatagcttttcaaaattttaacatttattaac 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 catccaggttgatcacttctttctttacaatagcttttcaaaattttaacatttattaac 550
Query: 369 tgtgtgtgtatgcatgcatgtgtgcatatgtgtgcacattcacctacatgtagaagctga 428
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 549 tgtgtgtgtgtgcatgcatgtgtgcttatgtgtgcacattcacctacatgtagaagctga 490
Query: 429 agaaccatttaaaacttgcaggagctg 455
|||||||||||||||||||||||||||
Sbjct: 489 agaaccatttaaaacttgcaggagctg 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_f24.g1 MSMg01no458_f24.g1 CHROMAT_FILE:
MSMg01no458_f24.g1 PHD_FILE: MSMg01no458_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:57 2005
(245 letters)
>mm_chr5_121325754_121326400
Length = 647
Score = 375 bits (194), Expect = e-108
Identities = 237/264 (89%), Gaps = 24/264 (9%)
Strand = Plus / Plus
Query: 2 tagtgagcaggtgtgcatgaggcgagtacacacatgagtcctttgagtctgagaaatgac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tagtgagcaggtgtgcatgaggcgagtacacacatgagtcctttgagtctgagaaatgac 261
Query: 62 cagatggttctcaacactggtggatggga-ca-taggtctctgtgaggaagggtgtgtgt 119
|||||||||| |||||||| ||||||||| || |||||||||||||||||||||||||||
Sbjct: 262 cagatggttcacaacactgatggatgggaccattaggtctctgtgaggaagggtgtgtgt 321
Query: 120 gtgtgtgtgcatgcatgtgtg------------------tgtgtgattccagaaccgagt 161
||||||||| || |||||| |||||||||||||||||||||
Sbjct: 322 gtgtgtgtg--tg--tgtgtgtgtgtgtgtgtgtgtgtatgtgtgattccagaaccgagt 377
Query: 162 gagagaccgaggcaggagtattcctgtgagttccacgacagcgtgtgtcacatcaaattc 221
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagagaccgaggcaggaggattcctgtgagttccacgacagcgtgtgtcacatcaaattc 437
Query: 222 atgtctcagaaaggaaaccacaat 245
||||||||||||||||||||||||
Sbjct: 438 atgtctcagaaaggaaaccacaat 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 647
Length adjustment: 9
Effective length of query: 236
Effective length of database: 638
Effective search space: 150568
Effective search space used: 150568
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
