Query= MSMg01no458_i23.b1 MSMg01no458_i23.b1 CHROMAT_FILE:
MSMg01no458_i23.b1 PHD_FILE: MSMg01no458_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:12 2005
(464 letters)
>mm_chr5_49695593_49696459
Length = 867
Score = 849 bits (439), Expect = 0.0
Identities = 459/467 (98%), Gaps = 3/467 (0%)
Strand = Plus / Plus
Query: 1 agatgcaatgcccatgatgtaatttaagagtgtaagccaagaagttaaaggagacagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgcaatgcccatgatgtaatttaagagtgtaagccaagaagttaaaggagacagagg 260
Query: 61 gagacctaattatattaggcacccaggaattctgggacgaactcatttgatcacagaggc 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gagacctaattatattaggcacccaggaattctggaacgaactcatttgatcacagaggc 320
Query: 121 acataaagaaatataaaggaatctatttaaatttattatgtgcctgctgctagttcagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataaagaaatataaaggaatctatttaaatttattatgtgcctgctgctagttcagct 380
Query: 181 gttgctaacagacgctccatggagagcctatggagagaagagcattctgatacgttctcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gttgctaacagacgctccatggagagcctatggagagaagagcattctgatatgttctcc 440
Query: 241 tggtatgaacctggggaaatagagttac---aaaaaaaaaactaaatgaaaatatgtggt 297
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tggtatgaacctggggaaatagagttaccaaaaaaaaaaaactaaatgaaaatatgtggt 500
Query: 298 atatcagggctaagtaaggttttagtttaacgatgctcaatctactaaaagttcaataaa 357
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatcagggccaagtaaggttttagtttaacgatgctcaatctactaaaagttcaataaa 560
Query: 358 cctttattgaacaaattaatgaatgccagtatactttgaaccctagaatctatggtgagg 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 cctttattgaacaaattaatgaatgccaatatactttgaaccctagaatctatggtgagg 620
Query: 418 tgtagtagagggccctgtttgaccttctgattatcaataataaggag 464
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggtagagggccctgtttgaccttctgattatcaataataaggag 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 867
Length adjustment: 10
Effective length of query: 454
Effective length of database: 857
Effective search space: 389078
Effective search space used: 389078
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_i23.g1 MSMg01no458_i23.g1 CHROMAT_FILE:
MSMg01no458_i23.g1 PHD_FILE: MSMg01no458_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:12 2005
(263 letters)
>mm_chr5_49886550_49887212
Length = 663
Score = 302 bits (156), Expect = 2e-86
Identities = 234/286 (81%), Gaps = 40/286 (13%)
Strand = Plus / Minus
Query: 1 tatacctagatagaggtttatttttcttataatgagggttcactgaaggctaaaagatgt 60
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 343 tatacttagatataggtttatttttcttataatgagggttcactgaaggctaacagatgt 284
Query: 61 ggctcatgttgggactatctggtctactttatacttcacccatattctctacttggttgc 120
||| |||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 283 ggcccatgttaggactatctggtctaccttatactttacccatgttctctacttggttgc 224
Query: 121 ctgtgtgtgagttccatatatatgtat--------------------------------- 147
||||||||||||||||||||||| |||
Sbjct: 223 ctgtgtgtgagttccatatatatatatatatatatatatatatatatatatatatatata 164
Query: 148 -------tattgttttttttaattatttacatttcaaatgttattccccctttcctgttt 200
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 163 tatatattattgttttttttaattattcacatttcaaatgttattccccctttcctgttt 104
Query: 201 ctctcccacaagccccctatctgatcccccttactccctacttcta 246
| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 103 ccctcccacaagccccctatctaatcccccttactccctacttcta 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space: 166116
Effective search space used: 166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
