BAC Information

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BAC

Clone NameMSMg01-458N08
Chromosome5 (Build37)
Map Location 31,749,686 - 31,749,939
singlet/doubletsinglet
Overlap genenone
Upstream geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458N08.T7 (MSMg01no458_n08.b1)MSMg01-458N08.TJ (MSMg01no458_n08.g1)
ACCAG544570AG544571
length773769
length of high quality
(start - end)
249 (79 - 327)254 (330 - 583)
definitionCHROMAT_FILE: MSMg01no458_n08.b1 PHD_FILE: MSMg01no458_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:32 2005CHROMAT_FILE: MSMg01no458_n08.g1 PHD_FILE: MSMg01no458_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXATTCGTAAAGGAGG
GCGGAATTCACTTTGTTACAAAAAAGGGCTCAGACTCACAGAGACCTGTC
CACCTCTGCCTCCTGAAGGCTGGAACCAAAGGCTTGTTCCAACATGCACA
GCTTCCCATAATAAATTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC
TTCTCTTCTCTTCTCTCTCTCTCTCTCTTCTCTCTTTTAAGTTAACATTT
TAAAATTTCTTTCCTTATATATTGCATCTTTACCTTAGNTTCCCCTTCCT
CTTCTCCACCCAGTTCCTCCCCCCCCCACCAGATCCATTCCTCGTCTGTT
TCCCTTCATAAAAGGGCAGGCCATCCAGGGATATGAACCAAACACAGCAC
ATCAAGTTACAATAAGACTAGGCACATGCCCTCATATTAAAGCCAGACAA
GGCAGCTCAGTATGAGGAATAGATGCAGAGACAGCCCTGCTTCTACTGTA
TGGAATTGAAAATATTCTCTTACTACTTATTTTTCATTCTAAGTCTCAAA
AATTTGAGCTTGTTTTAGTTGTTTTCCCTTGGGTCTGGGCTATTTCCATA
CTTTAAAAAAACTAACAGTGTATGTTCTTTTTAATTTTCCTGAAAAAAAA
AACTCTTTTTTTATTTTAATATTTACAAGACCTTATCAAATAAATAAACA
TTCCTTTAAATTTAGGCGCCTAN
NCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAATCAATGCAGAGCAACAGTTGCCAGA
TGTGAAGCCCTCTGAGTTGGGCCTGGGAACAGGTACACTGTCTTTAAGTT
TCAACCCTGGGCCACAGTTGCAGGAGATAAAACCTTCTGTGGTGAGCACA
GAGGTCAAAATGCTGGAAGAGTCACCTTTGAAATTCAAGCATGAACCTAT
ATTGCTATGTAGGAAATCCTGTGATTGGAGTCACAGTAAAAACGTTATGA
CACCCAAATCCGAGATACAATATGTTGATTTATCTGAGTTACACCCTAGT
CCAGAACTTCAGGGTATAAAATCTAAGGTGTTCTGCCCTGGGTCACACTT
GGAAGATATGTATTCTGCATCTACCTCCAATATAAATTCTCAATATGTAA
ATTCCAGTGAGTCAATATCTGTGCCATATTTGCAAGATACAAATTCCTCT
GCATGCATTCCAGATCCAAACACTCAGCGTATAAGGTGTGAGTTCAATCC
TGGAATATATTTGCATGGAACAATTTCTTCCTTGTGGTTCTCAAGATCAA
AATTGCAATGTGTAGATTCTATTGGCAGCAATCCTGAGTCCCATTTGCAA
GACATAAATTCTACTGAATGGCCCCCAGAGACAAGGCCTCAGTGTGGAAA
TTCTTGTGGATGCCTTCCCACGAACAAATATAAAGGGTGGGAAATTCCTC
CGCCTGTTTCCCCGCGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_n08.g1 MSMg01no458_n08.g1 CHROMAT_FILE:
MSMg01no458_n08.g1 PHD_FILE: MSMg01no458_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:32 2005
         (254 letters)



>mm_chr5_31749486_31750139
          Length = 654

 Score =  484 bits (250), Expect = e-141
 Identities = 253/254 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatctgagttacaccctagtccagaacttcagggtataaaatctaaggtgttctgccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatctgagttacaccctagtccagaacttcagggtataaaatctaaggtgttctgccct 260

                                                                       
Query: 61  gggtcacacttggaagatatgtattctgcatctacctccaatataaattctcaatatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtcacacttggaagatatgtattctgcatctacctccaatataaattctcaatatgta 320

                                                                       
Query: 121 aattccagtgagtcaatatctgtgccatatttgcaagatacaaattcctctgcatgcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattccagtgagtcaatatctgtgccatatttgcaagatacaaattcctctgcatgcatt 380

                                                                       
Query: 181 ccagatccaaacactcagcgtataaggtgtgagttcaatcctggaatatatttgcatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagatccaaacactcagcgtataaggtgtgagttcaatcctggaatatatttgcatgga 440

                         
Query: 241 acaatttcttcctt 254
           ||| ||||||||||
Sbjct: 441 acagtttcttcctt 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)