AACAACGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAC
ACCGCGGAATTCTTGAAAATACCCAAATGGAAGAAAGCCATGCATCATAG
GCTATGGTAAAAATCCAGAAAGAAATGATGGGGTTTTAACCAAGGAGTAG
AGAATCTGAGAAGAATGAAGAGTTTGGCCAAGGTATAATTAGGAATGAAC
AGCAGCCAGTGGCACACACATGAAATTTCATTTATTTGGGGACAAGCTGG
TGGATTACAAGTTTAAGGTTAGCCTAGGCAACTTAAGTCAGACTTTGTCT
CCAATTAAAAAGGGAAAGAGGTATGCCTTATCNATTAGGAGGCTTTAGGT
TCAGTCTTCAATAAGTATAAATATTACTGAATGGATTAAAAATAGACAAA
AAGGATAGCTTGTGAAAGTGGAGCTGAAAACATTTTCTGGTGAAATGATA
GTATGATATGTAGATGACTATTAGAAACAACTCCAGGATTTTTCTTTTTA
CATAAGCGATAATGGATGCTTGCTATCGGTGACTGACAACAGCGGACCAA
ATAGAAACCTGGGAGTAAGCAGCCTATGAGTTATATGANAATTCACACTT
GTATATAANAATCAAGAAGGACCTGAGCGTANAGTAGGGTAGGAGATGTC
AGAAATACCTCTTGTTCCTCTCAGACACAGGAATGCCAGTGAAGTGCAGA
GAAAATCAGGGCTAAAGCCGGATGACTGAACTTGG

CACGATGCAGTGCGAGGCCTGGGGGNCGCCTGGTAGCAAAATCTAGGTGA
ACTATAGAAGTTACGCAGAAATTCTCAGCGATCCTGCCGACATGCCCTGT
GCGGACCCTGCATAGCATCCTAATGAAGGGCACACTACTGCCTCTGTGCC
ATCGTGACTAGAGGCTTTGGGTGCAGTCACAGAGGAGCTCAGTCCCCTGG
AAGCCTAAACAGTCATTCTCAGACTTCATCACTCAGAGCCATCACTCAGG
CTTTGGAACTTGTGCCTTTCAGCTGCTTTGAGCCAAGCCGCCTACCACCT
GGATACCTCGAGGTGTTGGGTCNGTGTGACTCTTTCTATCATTTTTGTTG
TTGTTTTATTTTCAAGCATTTTATTGGAAGTTATTAATGTGGAGAAATCA
CCTGTATGTGCAGAACAATTGAGAATAATTGAACAAATTAGAGAAAGCAC
ATATGATGAAGTACACAGAGACATTTTATGTTACTTCTTTATGTTAGGAA
GGTAAAAAGAATAACAGAGCCGTTATAACATTTATTCTCTGGTACTATGG
GGAAGATAGTGATTTTCTCTATTTTATCTTATTGTATTTTATTTTGTATT
TTAGCTTCTACAGATGCTTTGGCATTAGAGAACTCTCTCTAGTTCTGGCT
GTGCTGTACCTCACCATGTAGACTAGACTGGCCTCAAACTCACATAACCT
CTCGGTCTCAGTTTCCAGATGATGCGCCTAAAGGTGCGG

Query= MSMg01no458_o16.b1 MSMg01no458_o16.b1 CHROMAT_FILE:
MSMg01no458_o16.b1 PHD_FILE: MSMg01no458_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:38 2005
         (589 letters)



>mm_chr5_103333403_103334391
          Length = 989

 Score = 1067 bits (552), Expect = 0.0
 Identities = 578/588 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaagccatgcatcataggctatggtaaaaatccagaaagaaatgatggggttttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aagaaagccatgcatcataggctatggtaaaaatccagaaagaaatgatggggttttaac 729

                                                                       
Query: 61  caaggagtagagaatctgagaagaatgaagagtttggccaaggtataattaggaatgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 caaggagtagagaatctgagaagaatgaagagtttggccaaggtataattaggaatgaac 669

                                                                       
Query: 121 agcagccagtggcacacacatgaaatttcatttatttggggacaagctggtggattacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agcagccagtggcacacacatgaaatttcatttatttggggacaagctggtggattacaa 609

                                                                       
Query: 181 gtttaaggttagcctaggcaacttaagtcagactttgtctccaattaaaaagggaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 608 gtttaaggttagcctaggcaacttaagtcagactttgtctccaattaaacagggaaagag 549

                                                                       
Query: 241 gtatgccttatcnattaggaggctttaggttcagtcttcaataagtataaatattactga 300
           |||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 548 gtatgccttacctagtaggaggctttaggttcaatcttcaataagtataaatattactga 489

                                                                       
Query: 301 atggattaaaaatagacaaaaaggatagcttgtgaaagtggagctgaaaacattttctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atggattaaaaatagacaaaaaggatagcttgtgaaagtggagctgaaaacattttctgg 429

                                                                       
Query: 361 tgaaatgatagtatgatatgtagatgactattagaaacaactccaggatttttcttttta 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaaatgatagtatgatatatagatgactattagaaacaactccaggatttttcttttta 369

                                                                       
Query: 421 cataagcgataatggatgcttgctatcggtgactgacaacagcggaccaaatagaaacct 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 368 cataagcgataatggatgcttgctatcggtgactgacaacagcggaccaaataggaacct 309

                                                                       
Query: 481 gggagtaagcagcctatgagttatatganaattcacacttgtatataanaatcaagaagg 540
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 308 gggagtaagcagcctatgagttatatgaaaattcacacttgtatataaaaatcaagaagg 249

                                                           
Query: 541 acctgagcgtanagtagggtaggagatgtcagaaatacctcttgttcc 588
           ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 248 acctgagcgtagagtagggtaggagatgtcagaaatacctcttgttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no458_o16.g1 MSMg01no458_o16.g1 CHROMAT_FILE:
MSMg01no458_o16.g1 PHD_FILE: MSMg01no458_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:38 2005
         (274 letters)



>mm_chr5_103179830_103180503
          Length = 674

 Score =  491 bits (254), Expect = e-143
 Identities = 269/274 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgactctttctatcatttttgttgttgttttattttcaagcattttattggaagttatt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gtgactctttctatcatttttgttgttgttttattttcaagtattttattggaagttatt 260

                                                                       
Query: 61  aatgtggagaaatcacctgtatgtgcagaacaattgagaataattgaacaaattagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aatgtggagaaatcacctgtatgtgcagaacaattgagaataattgaacaaattacagaa 320

                                                                       
Query: 121 agcacatatgatgaagtacacagagacattttatgttacttctttatgttaggaaggtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 321 agcacatatgatgaagtacacagagacattttatgttacttctttatgtaatgaaggtaa 380

                                                                       
Query: 181 aaagaataacagagccgttataacatttattctctggtactatggggaagatagtgattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 aaagaataacagagccgttataacatttattctctggtactatggggaagatagttattt 440

                                             
Query: 241 tctctattttatcttattgtattttattttgtat 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctattttatcttattgtattttattttgtat 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)