BAC Information

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BAC

Clone NameMSMg01-458P16
Chromosome5 (Build37)
Map Location 54,432,057 - 54,432,609
singlet/doubletsinglet
Overlap geneStim2
Upstream geneSlc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458P16.T7 (MSMg01no458_p16.b1)MSMg01-458P16.TJ (MSMg01no458_p16.g1)
ACCAG544682AG544683
length733741
length of high quality
(start - end)
265 (335 - 599)554 (74 - 627)
definitionCHROMAT_FILE: MSMg01no458_p16.b1 PHD_FILE: MSMg01no458_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:43 2005CHROMAT_FILE: MSMg01no458_p16.g1 PHD_FILE: MSMg01no458_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCACTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAACA
CCGCGGAATTCCATGATCTCGCACCCACTGTCGTACTTCTCTGGCTGTGA
AATGAGTTCCTTGGTCAGAAGCAATACTGCGTGGAATACCATGACGATAA
ATAAGGCATTCTGTCAGTCCGTTAATGGTGGTTTTAGCAGAGGCATTACG
TGCAGGAAAGGCAAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAA
CAAAACGCTGTCCTTTCCACGAAGGAAGTGGTCCAATGTAGTCAACCTGC
CACCAGGTTGCTGGCTGGTCACCTCTAGGTANGTTGCCATATCTGGGGCT
CAGTGTTGGTTTCTGCTGTTGGCAGATCTGGCAATCAGCAGCAGCTGTAG
CCAGGTCAGCCTTGGTGAGTGGAAGCCCGTGTTGCTGAGCCCAAGCATAA
CCTCCATCTCGACCACCATGGCCACTTTGTTCATGTGCCCAATGAGCAAT
GACAGGGATGGCTGGGGAGAGAGGCTGACTGTCCACAGAACGGGTCATCT
TATCCACTTGATTATTGAACTCCTCCTCGGCTGAAGTCACCTTTTGGTGA
GCATTTACATGGGACACAAATATCTTCACATCCTTTTGCCATTTGGAGAG
ATCTATCCACATATTTCTTCCCCAGATGTCTTTTCTCACCAATTTTCCCA
TTGTGATCTTTCCCAAGCCCCTGACCATCCAGG
CCCGATGATATGGGTAGGCTGGNGGNCGCCTGGTTCACAACATTAGGTGA
ACTATAGAAGTACCGCAGACATCCTGTTTCGTTGGTTGGTTTGTGTTTTT
CTTTTTTTCCTGAGACCTTATCGGTGTGGTAACGGACTCTGTTTTTCGAT
TGGAAAACTATGTATGTTTCTATTACCAAACATAAAGAATTTCTTGAAAT
AATTGATCGAAACAACCAACCAATGAACCAACCAGTACATAACAAAACTA
TGTTCTCAGACTAACATGTTCCTCCAAAGTCAAATAGCTAGCTAGCAATA
TGAACATCTTCCTTTCTNNATCATTCCCCATGGGAAGAAGTATGAGGCTG
ACACTGGTTGATAAGAGCATCTGGACCAGTCAAACAGAACTCTCATGTAT
GCTCATCTGTGTGCTTCTAGTCAGTGGTACTTTGAATGAAACTGCTTCCT
GATTTGAAACTTGCTTTCAGAGAATATTTTTTTTTTTTTGGTGAATGGGA
ATATAGTTTAGTGGTAGGGCACATACACAGAATACAAAGGCCCTAAGTTT
GAGTGCCAATATCACCCAAAACAGATAAACAAATGGATTCAAATAAATAA
ATCTTTTTCTGCATAATATTCTTTGTTGGTAATATTAAGATTTGGAAACC
TGATTCTCTGTTTTCCTGATTCTCCTGAAAACAGCTTGTGAGATGGAGGC
TAAGGCTCTAGCTTTGGACAGACTGCGGTTGTAATTACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_p16.g1 MSMg01no458_p16.g1 CHROMAT_FILE:
MSMg01no458_p16.g1 PHD_FILE: MSMg01no458_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:43 2005
         (554 letters)



>mm_chr5_54431857_54432809
          Length = 953

 Score = 1015 bits (525), Expect = 0.0
 Identities = 547/555 (98%), Gaps = 3/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtttcgttggttggtttgtgtttttctttttttcctgagaccttatcggtgtggtaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtttcgttggttggtttgtgtttttctttttttcctgagaccttatcggtgtggtaac 260

                                                                       
Query: 61  ggactctgtttttcgattggaaaactatgtatgtttctattaccaaacataaagaatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactctgtttttcgattggaaaactatgtatgtttctattaccaaacataaagaatttc 320

                                                                       
Query: 121 ttgaaataattgatcgaaacaaccaaccaatgaaccaaccagtacataacaaaactatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaaataattgatcgaaacaaccaaccaatgaaccaaccagtacataacaaaactatgt 380

                                                                       
Query: 181 tctcagactaacatgttcctccaaagtcaaatagctagctagcaatatgaacatcttcct 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcagactaacatgttcctccaaagtcaaatagctagctagcaatatgaacatcttcct 440

                                                                       
Query: 241 ttc-tnnatcattccccatgggaagaagtatgaggctgacactggttgataagagcatct 299
           ||| |  | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctaaa-cattccccatgggaagaagtatgaggctgacactggttgataagagcatct 499

                                                                       
Query: 300 ggaccagtcaaacagaactctcatgtatgctcatctgtgtgcttctagtcagtggtactt 359
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 500 ggaccagtcaaacagaactcttatgtatgctcatctgtgtacttctagtcagtggtactt 559

                                                                       
Query: 360 tgaatgaaactgcttcctgatttgaaacttgctttcagagaatatttttttttttttggt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 tgaatgaaactgcttcctgatttgaaacttgctttcagagaatatttttttttttt-ggt 618

                                                                       
Query: 420 gaatgggaatatagtttagtggtagggcacatacacagaatacaaaggccctaagtttga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaatgggaatatagtttagtggtagggcacatacacagaatacaaaggccctaagtttga 678

                                                                       
Query: 480 gtgccaatatcacccaaaacagataaacaaatggattcaaataaataaatctttttctgc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtgccaatatcacccaaaacagataaacaaatggattcaaataaataaatctttttctgc 738

                          
Query: 540 ataatattctttgtt 554
           |||||||||||||||
Sbjct: 739 ataatattctttgtt 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space:   512992
Effective search space used:   512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)