BAC Information

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BAC

Clone NameMSMg01-459B14
Chromosome5 (Build37)
Map Location 113,288,679 - 113,471,381
singlet/doubletdoublet
Overlap geneMyo18b, Adrbk2
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
Downstream geneCrybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459B14.T7 (MSMg01no459_b14.b1)MSMg01-459B14.TJ (MSMg01no459_b14.g1)
ACCAG544774AG544775
length764775
length of high quality
(start - end)		392 (42 - 433)406 (72 - 477)
definitionCHROMAT_FILE: MSMg01no459_b14.b1 PHD_FILE: MSMg01no459_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:53 2005CHROMAT_FILE: MSMg01no459_b14.g1 PHD_FILE: MSMg01no459_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,470,993 - 113,471,381)(113,288,679 - 113,289,083)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATCACTCTCTACTGTTTGCAAGATCCAACCTCAGAAGGCGTGAGACTC
ATTCTGGTCCCAGGCTCCTGGGCTCTGTTTGGCCACTTTAGCCTCCTTAT
TTGTTTTTATTGTGAGGTGCTGGGAATTGAAGCCAGGGCCTTGTGCATTT
GAGGCAAACTCCATCCCATGAGCTATGCTTCCACCATGGCTACTTTAATT
GTATCCTCTATTCCCACCCCCCCACCCCCAAAGATTTTGGAGTCCGGTCA
CCCCTGCTGGAGTGGAAAGAACAACTTCTGAACTTAGCAGCTAAGTGACA
AAGATAAATGGTGCTGGGTTCCAGCTGAGCCGGCTGGGCTCACTCCCTTT
TATGGTAATGGACAGCATGTGGCCTCACTGTGCCTAAGTGTCACCCAAGT
CACAGACACTGCAAGAACTTGGTCCTCACCAAGCTAGTAGCAGATGCTTC
TGTGTAAACTAAAGGCCGTGGGGGTGGGTGCTATCGTCTCCTCCCCCCTT
CTCTTCCCCTCCCTTTTCCTTGCTGCTCTTTTTTCTATTGTTTTTACTGT
CCTCTTTCTACTTTTCTCGTCCTCANCATATTCCCCCCCCCCTCTTTTCC
CGTTTTTTTTCCTTCTTTCCCCCCTCTTTCTTCGTCTTCCGCCCCCCCCC
TTTTCCCGCCCCCTTTACTCCTTTTTCGACTCTTTTCTCGCCCTCCTTTT
CCTTTTCTCTCTTT

GATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTAGAGTTCCATCGCCCAGAGAGGGCAT
GGCATAGGCCAAAGGTCACACAGCAAATTGATAGCAGGGAAGGACGGAAG
GCTTCCCCGATTCCTGCCCACACCGATTCTTTTCAACTGAGAGACTCGAG
AGCTTCCTCGGCCAATTGGAACAACATCAAAGCATGCAGTGACATTGAAA
GATTCGCCTTGGAAGCGTTTCAATTAACAGCAGAAGCATGTCCCACCTCT
CTGTCATATTTCTGGGCCACCACAGAACCACCAAGTCCCTAGCAACCAGG
AGCTGAGCCTAGCAACCGCAGCTGCTCCACCACAGCAGAAAGAGGGGAGG
AAGGCACCACCCAACAAAGGCTCGGTTATTTATGAGATTTCAAAGTAGCA
GGAAAGGACACACAGAGGACAGATGGGGAGATTATCCTGGCTCCCAATGT
CAGCGAGGAGCACTCGATTTTGAATAACAGGTAGAGCCCATCACTGAGGG
GAGATTCTCACAAAGCCTCCCTCTTGGGGCTCCTCCTCCCAAGCCCTTAA
GAAAAAAGAAAAAGCGGATTTAGGAGAAAAGTTCCCGGCCCATGGGGGGG
GAGAACATCCGTATGGTTCTCATAGCCCGGTTTTTTTTCAATACTCTTTA
AAATGGCCTCCACCTGTCCCCTCTTTTCCTCACCTTCGTTTCCCTTACAT
TTTTCCTCCGGCGTGCCCCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_b14.b1 MSMg01no459_b14.b1 CHROMAT_FILE:
MSMg01no459_b14.b1 PHD_FILE: MSMg01no459_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:53 2005
         (392 letters)



>mm_chr5_113470601_113471392
          Length = 792

 Score =  698 bits (361), Expect = 0.0
 Identities = 382/389 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatcactctctactgtttgcaagatccaacctcagaaggcgtgagactcattc 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggaattctatcacactctactgtttgcaagatccaacctcagaaggcgtgagactcattc 722

                                                                       
Query: 64  tggtcccaggctcctgggctctgtttggccactttagcctccttatttgtttttattgtg 123
           ||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 721 tggtctcaggttcctgggctctgtctggccactttatcctccttatttgtttttattgtg 662

                                                                       
Query: 124 aggtgctgggaattgaagccagggccttgtgcatttgaggcaaactccatcccatgagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 661 aggtgctgggaattgaagccagggccttgtgcatttgaggcaaactccatcccgtgagct 602

                                                                       
Query: 184 atgcttccaccatggctactttaattgtatcctctattcccacccccccacccccaaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atgcttccaccatggctactttaattgtatcctctattcccacccccccacccccaaaga 542

                                                                       
Query: 244 ttttggagtccggtcacccctgctggagtggaaagaacaacttctgaacttagcagctaa 303
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttttggagtccagtcacccctgctggagtggaaagaacaacttctgaacttagcagctaa 482

                                                                       
Query: 304 gtgacaaagataaatggtgctgggttccagctgagccggctgggctcactcccttttatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtgacaaagataaatggtgctgggttccagctgagccggctgggctcactcccttttatg 422

                                        
Query: 364 gtaatggacagcatgtggcctcactgtgc 392
           |||||||||||||||||||||||||||||
Sbjct: 421 gtaatggacagcatgtggcctcactgtgc 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no459_b14.g1 MSMg01no459_b14.g1 CHROMAT_FILE:
MSMg01no459_b14.g1 PHD_FILE: MSMg01no459_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:53 2005
         (406 letters)



>mm_chr5_113288479_113289284
          Length = 806

 Score =  760 bits (393), Expect = 0.0
 Identities = 402/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagagttccatcgcccagagagggcatggcataggccaaaggtcacacagcaaattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagagttccatcgcccagagagggcatggcataggccaaaggtcacacagcaaattga 260

                                                                       
Query: 61  tagcagggaaggacggaaggcttccccgattcctgcccacaccgattcttttcaactgag 120
            |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 261 cagcagggaaggacggaaggcttccccgattcccgcccacactgattcttttcaactgag 320

                                                                       
Query: 121 agactcgagagcttcctcggccaattggaacaacatcaaagcatgcagtgacattgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactcgagagcttcctcggccaattggaacaacatcaaagcatgcagtgacattgaaag 380

                                                                       
Query: 181 attcgccttggaagcgtttcaattaacagcagaagcatgtcccacctctctgtcatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcgccttggaagcgtttcaattaacagcagaagcatgtcccacctctctgtcatattt 440

                                                                       
Query: 241 ctgggccaccacagaaccaccaagtccctagcaaccaggagctgagcctagcaaccgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggccaccacagaaccaccaagtccctagcaaccaggagctgagcctagcaaccgcag 500

                                                                       
Query: 301 ctgctccaccacagcagaaagaggggaggaaggcaccacccaacaaaggctcggttattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctccaccacagcagaaagaggggaggaaggcaccacccaacaaaggctcggttattt 560

                                                        
Query: 361 atgagatttcaaagtagcaggaaaggacacacagaggacagatgg 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgagatttcaaagtagcaggaaaggacacacagaggacagatgg 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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