BAC Information

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BAC

Clone NameMSMg01-459E10
Chromosome5 (Build37)
Map Location 77,750,101 - 77,750,354
singlet/doubletsinglet
Overlap genePolr2b
Upstream genePdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik
Downstream geneIgfbp7, Pea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459E10.T7 (MSMg01no459_e10.b1)MSMg01-459E10.TJ (MSMg01no459_e10.g1)
ACCAG544909AG544910
length772836
length of high quality
(start - end)
339 (66 - 404)231 (72 - 302)
definitionCHROMAT_FILE: MSMg01no459_e10.b1 PHD_FILE: MSMg01no459_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:08 2005CHROMAT_FILE: MSMg01no459_e10.g1 PHD_FILE: MSMg01no459_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAACAGGATCCGCGGAAT
TCTTCCCTACCACCAGTACTATATGGGTTAGCATGCTGGCCAGAGGAGGA
CAGGTATGCTAATGCTGGGTATGTGATGTCTGGGCTTTTCCTTTGTGCTT
TGCTTTACCTACTTAAACATTTTTGTACTGAGGATTGAATCTAGAGCTTA
GACAGTGCTCTGTCGCTGAGCGACAGCCTCAGCTCTGTCTCATTTCTTGT
TTTGTAATTTTTATTAAGGCATGGTCTTGTCTCATCTCGTCTTGTCTCGT
CTCGTCTTTTCTTTTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT
CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTCCTGGCTTTT
TCCAAGTCATGGTTTCTCTGTGTAGCCCTGGATGTCCTGTAACTCACTCT
GTAGACCAGGCTGGACCCACACTCAGGGATTTGCCTTCCTTTGCCTAAGT
GCTGAGATTAAAGGTGTGTGCCCCTATTGCCTGGCCTTGTTTTACACTTA
CTACACTACTTAATACTTTTTCTTTTTTTGAAACTGGTCTCCCCTATTTA
CTCACTGGTTTTTGAACCTACCCCCTTTACTCCTTTACCCCTTAATTTCT
TCTAACCTCCCCCTCGTCCCTCAATTGTTTCCATTATCTAACCTTGGTTA
ACACCCCCCCATTTATATTACCCCATCCCCATTCCCCGACCGTGATCCTC
TTTCCCCGATTTTTTCCTTCCG
ATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGNGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCNACTCTGGAAATC
NCGTCTGGGCGGTTCCTCTTATTATTTGGACATAGTTACTACCCGGAAGG
ATCCCAGCCATTACCTTCTCCCTGGGGCAAATATTCCCGGAAGAAGGGCC
CTCCACCTGTGGAAAAAAAGTAAACATGGCCCCCCCTCTTGGTTGTTAAT
ACGGGGTTTTTTTTTTTTAATTATTCCCCCCGAACCTTGGGGGAAAAAAA
TACACAAAGGGGCTTCCCTCTCTTTTTTAGTGTGGAGAGGTGCTTTTCCT
CCTACCTACTCGGNNCCNCCCTTCTCTTTCTTCCCAACTTCTTTCCTTTC
TCCTTCTCCTTTCCCCCTTTTCTTTTTTCCCCTTGTTGTTATTTAACGCC
CCCTCCTTCTCCTCTCCTCTTCCTCCCTCTCTTTTTTTCTCTTTTTCCCC
CGTTTCCCTTCTACCCTTCTTTTTTTCCCTCTTCCTTTCTCCTCCTCCTC
TCACTTCTTTCTCTTTTTCCTCTCTTTCTCTTTCCTTTCTCCTCCTTTTC
TTCTTTTGTTTTCCCCTCTTTTTTTTCTTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_e10.b1 MSMg01no459_e10.b1 CHROMAT_FILE:
MSMg01no459_e10.b1 PHD_FILE: MSMg01no459_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:08 2005
         (339 letters)



>mm_chr5_77749901_77750639
          Length = 739

 Score =  476 bits (246), Expect = e-138
 Identities = 252/254 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtactatatgggttagcatgctggccagaggaggacaggtatgctaatgctgggtatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtactatatgggttagcatgctggccagaggaggacaggtatgctaatgctgggtatgtg 260

                                                                       
Query: 61  atgtctgggcttttcctttgtgctttgctttacctacttaaacatttttgtactgaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtctgggcttttcctttgtgctttgctttacctacttaaacatttttgtactgaggat 320

                                                                       
Query: 121 tgaatctagagcttagacagtgctctgtcgctgagcgacagcctcagctctgtctcattt 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tgaatctagagcttagacagtgctctgtcgctgagtgacagcctcagctctgtctcattt 380

                                                                       
Query: 181 cttgttttgtaatttttattaaggcatggtcttgtctcatctcgtcttgtctcgtctcgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cttgttttgtaatttttattaaggcatggtcttgtctcatctcgtcttgtcttgtctcgt 440

                         
Query: 241 cttttctttttttt 254
           ||||||||||||||
Sbjct: 441 cttttctttttttt 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)