BAC Information

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BAC

Clone NameMSMg01-459J12
Chromosome5 (Build37)
Map Location 14,331,038 - 14,540,868
singlet/doubletdoublet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459J12.T7 (MSMg01no459_j12.b1)MSMg01-459J12.TJ (MSMg01no459_j12.g1)
ACCAG545149AG545150
length790815
length of high quality
(start - end)
440 (64 - 503)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no459_j12.b1 PHD_FILE: MSMg01no459_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:34 2005CHROMAT_FILE: MSMg01no459_j12.g1 PHD_FILE: MSMg01no459_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,331,038 - 14,331,477)(14,540,629 - 14,540,868)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGGAATTC
TTTACTACGCATTCAGAACCTTTATAACAAGAGGAGCACATGCAGATAGG
TGAAGCTCTGTCTTGACTATTTCCTCTGTAGTCAAGATGAGGAAGATCAC
AGTAAAGCTCCCTTGTGTGAGAAGAGTGGCCATTCATTAATGTTGAAGTT
GCAGAATTAATCAATTGAGTATATGCATTCTTGTCAGGTCTCATCTGCCA
ATTACAAAGACTCCATCCCTGGTATCCTACAGTCACCAGGACCTGTTAAG
TGTATTGCATTGTTTTGGTCCAAAATAAGATTCCAGAGCCTGTACACATC
TCTGCATGTTTTAGAAACTATTGTCAAGCTCTATTAATGAAGAAAGTGAA
GGGTATTTAGTGATATTATAGAAGAGATTTAGTATCCATTCCTCTGTTGA
GGGACATTGGGGTTGTTTCCAACTTCTGGCTATATAAATAAGGCTGCTAT
GAACATAGTGGAGCATGTATCCTTATTACATGTTGGAGTACCTTCTGGGT
ATATGCCTAGGAGTGGCCCTCACGTAACAAGTTCTATGTCCAGTTATCCA
GAGACCCCCCTACTGTTTTCCCGAAGGATTGTTCCACCTTGGAATCCCCC
CCTTACGGGGTGAGAGTTCTTCTTTTTCTCCTTTCCTTCCCTGTAATTTT
CTCCCCCCTACACCTTTTTCTCCCTCCCTCTCTACCCGGTGTGCCGGATA
TCTTACTCTGCCCTTGCATTTTCCCTTCTCTGACACTCTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGTCCCCAAACATTCAGAATAAACTGCT
GTAGATTTTCATTCCTATGTGACCTAGGTAGTGCTTACCTCAGTCAGGTG
GGGCGTTGGGTTAAATCCACAGAGATTGCAAACTTGATTCTTGCATTCTG
TGCAGGTGTTGAAGTTGGGAGGATCCTGAGACCCTACGTTGAGTTCCGTT
CTGCAGAGAGGACAGGCCGGTTTGGGTTTGGTGGTCTTGTCTGGCTTCTG
GGCGAGGACGGTCTTTTTCTGCTCTGTAGGTGGAGGTTTGCTGACCCTCC
CATGTGTGGGCTTCTTGTCTTTCTCTGCCTTCTTCACCGCTGGAGTTTGC
GTAGTCCTTCCCTTTTACGCCCCCATTCTGTTACGGCATCTTCGTGTTCT
TCCTTCCTAGCGCTCCGCTCTCCCCCATCTGCTTTTATCTTGCTCGCTCC
TCCCTCCTTTTTCTCGCCCCCCTTATCTTTCCTGTCTCTTCCTTTCTTCC
CTCTTTTCCTCCGCCCCCCTCTTCTCTCTTTTCTCTTTTCTCTCTTCTTC
TCTCTTCCCTTTTTTTCCCCCTTTTTCTTTTCCCCCCTCCTTCTTCTTCC
ACATCTTTATATTCTGTTTGTCTACTCTCTCCCCTCCTTTCTTTTCTCTT
CTTTTCCTCTTTCCTCACTTCTCTCCCTCCTCCTGTTTCTCTTCTCTCTC
CCATATCCTCCTCTTTCTCCCCCCCCTTTCTTCCTTTTTTTCTTTCCTCG
CTCTTCCTCCCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_j12.b1 MSMg01no459_j12.b1 CHROMAT_FILE:
MSMg01no459_j12.b1 PHD_FILE: MSMg01no459_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:34 2005
         (440 letters)



>mm_chr5_14330838_14331677
          Length = 840

 Score =  828 bits (428), Expect = 0.0
 Identities = 437/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacctttataacaagaggagcacatgcagataggtgaagctctgtcttgactatttc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| 
Sbjct: 201 cagaacctttataacaagaggagcacatgcagataggtgaaactctggcttgactatttg 260

                                                                       
Query: 61  ctctgtagtcaagatgaggaagatcacagtaaagctcccttgtgtgagaagagtggccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgtagtcaagatgaggaagatcacagtaaagctcccttgtgtgagaagagtggccat 320

                                                                       
Query: 121 tcattaatgttgaagttgcagaattaatcaattgagtatatgcattcttgtcaggtctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattaatgttgaagttgcagaattaatcaattgagtatatgcattcttgtcaggtctca 380

                                                                       
Query: 181 tctgccaattacaaagactccatccctggtatcctacagtcaccaggacctgttaagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgccaattacaaagactccatccctggtatcctacagtcaccaggacctgttaagtgt 440

                                                                       
Query: 241 attgcattgttttggtccaaaataagattccagagcctgtacacatctctgcatgtttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgcattgttttggtccaaaataagattccagagcctgtacacatctctgcatgtttta 500

                                                                       
Query: 301 gaaactattgtcaagctctattaatgaagaaagtgaagggtatttagtgatattatagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaactattgtcaagctctattaatgaagaaagtgaagggtatttagtgatattatagaa 560

                                                                       
Query: 361 gagatttagtatccattcctctgttgagggacattggggttgtttccaacttctggctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagatttagtatccattcctctgttgagggacattggggttgtttccaacttctggctat 620

                               
Query: 421 ataaataaggctgctatgaa 440
           ||||||||||||||||||||
Sbjct: 621 ataaataaggctgctatgaa 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no459_j12.g1 MSMg01no459_j12.g1 CHROMAT_FILE:
MSMg01no459_j12.g1 PHD_FILE: MSMg01no459_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:34 2005
         (243 letters)



>mm_chr5_14540429_14541071
          Length = 643

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtccccaaacattcagaataaactgctgtagattttcattcctatgtgacctaggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 440 aggtccccaaacattcagaataaactgctgtagattttcattcctatgtaacccaggtag 381

                                                                       
Query: 61  tgcttacctcagtcaggtggggcgttgggttaaatccacagagattgcaaacttgattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgcttacctcagtcaggtggggcgttgggttaaatccacagagattgcaaacttgattct 321

                                                                       
Query: 121 tgcattctgtgcaggtgttgaagttgggaggatcctgagaccctacgttgagttccgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgcattctgtgcaggtgttgaagttgggaggatcctgagaccctacgttgagttccgttc 261

                                                                       
Query: 181 tgcagagaggacaggccggtttgggtttggtggtcttgtctggcttctgggcgaggacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgcagagaggacaggccggtttgggtttggtggtcttgtctggcttctgggcgaggacgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)