BAC Information

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BAC

Clone NameMSMg01-459P06
Chromosome5 (Build37)
Map Location 126,988,044 - 126,988,408
singlet/doubletsinglet
Overlap genenone
Upstream geneAacs, Tmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459P06.T7 (MSMg01no459_p06.b1)MSMg01-459P06.TJ (MSMg01no459_p06.g1)
ACCAG545424AG545425
length833785
length of high quality
(start - end)
249 (66 - 314)375 (73 - 447)
definitionCHROMAT_FILE: MSMg01no459_p06.b1 PHD_FILE: MSMg01no459_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:04 2005CHROMAT_FILE: MSMg01no459_p06.g1 PHD_FILE: MSMg01no459_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTTTCCAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCAC
ATTTTCTGTATCCATTCCTCTGTTGAGGGGTATCTGGGTTCTTTCCAGCT
TCTGGCTATTATAAATAATAGCTCTTGACTCTAGCTACATATGTATCAAA
AGATGGCCTAGTCGGACATCACTGGAAAGAGAGGCCCATTGGACACACAA
ACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAAAAATGAGA
ATGGGTGGGTAGGGAAGTGTTGGCGCACNCCCCTCCTCTTCTCCTCCTCT
TTTTTTTTTCTCTTCTCTTTTGTTTCGCTCCCCCTCGCTCCATTTTATTT
TTCGCGCCTTCCCCACCCTCTGCACATGGTTTGTTTACTTTCCTTTCTTA
TTTTCTAGTCGTTCTTATTCTCTCCCTTTCTCTTACCTCCTCCTTCCCCC
ACCCTTTTCCTCCTTTTTTTTTTTCCTCCCTCTTTCTTTCTCTTCCTTCT
TCCTTCTTTCTTCTCTCCCCCCCTCTGCATCCCCTTCTCTTTTCTCTCTC
CCCCCCTACTTTTTTTTTTTTTTTTTTTCCCCCCCCCCTTTCTCTCTTAT
CGTGCCTCCTCGACGTACTTTTCCCTCCTTCTAGTTATTTTCCCGCGTTT
ACTTTTCCCCCTCTCCCCCTCCTCCTTTACTTCATCTTTCCCGCCCCGCT
TCCTCTTTATCCCCCCCTCCCATATAACCCCTTTATCACCCCCAACAACA
CATCCCTCCCATTTTCGCTTTTCTTTCCCCCTN
ATGATAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGTCTTGCTTTGTAAATCCAGGATGCA
ACTGTCAGTATCCCCCACTGGTCGTCAGTGATCAGCCTGGAAGCTCAGGT
GGACATACATTCACATTTTTGTAACTTTAATTGTGACTCCTCCTGCATGC
CTGCTCACTGTCCAATATGGGAAACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACCTGCAAAGGTTTCAAATCCCA
GTCTTCATTCTCTGAATAAGCATGGAGTGTGAGCATATTCTCTGTGAACA
TGTTCATTGCCATGTAGACCCAATTAAGGTTACTCATGAGAAGTGGAGAA
ACCCTGCCTTTTCAGATGGTTTCCATACAACCATGGCATTCTTCTGAGTG
GATCAAAGTGGGAGAATGAGAACCCGGTCTGCATTTATAGCCACTTGATT
CTGCCTGCTCTGGAATCAAGGAATTGAACGACCCCTATCTATTACAAGTG
TGGAAACACAGATACCCTTTTTTACACTTAGTAACTTTTCCCCACTTCGT
TTTCCACTTTTAATTATCAAACTACAATTATACCCGGAACTACTTATCTC
CTTTTTTTTTCACTTCCACCTTCTAACTTTTCTCACTCCTTGTCCCCCCT
CAACCTCCTTTTCAATTCTCTTCCTCCCCCCCACTTAACTTTCCCTTTTT
TTTTCCTTCCTCTCGTAACATCCCCTCACAACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_p06.g1 MSMg01no459_p06.g1 CHROMAT_FILE:
MSMg01no459_p06.g1 PHD_FILE: MSMg01no459_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:04 2005
         (375 letters)



>mm_chr5_126987637_126988411
          Length = 775

 Score =  652 bits (337), Expect = 0.0
 Identities = 361/375 (96%), Gaps = 10/375 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcttgctttgtaaatccaggatgcaactgtcagtatcccccactggtcgtcagtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 atgtcttgctttgtaaatccaggatgcaactgtcagtatcccccactggtcgtcagtgat 713

                                                                       
Query: 61  cagcctggaagctcaggtggacatacattcacatttttgtaactttaattgtgactcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cagcctggaagctcaggtggacatacattcacatttttgtaactttaattgtgactcctc 653

                                                                       
Query: 121 ctgcatgcctgctcactgtccaatatgggaaacacacacacacacacacacacacacaca 180
           |||||||||||||||||||||||||||||||          |||||||||||||||||||
Sbjct: 652 ctgcatgcctgctcactgtccaatatgggaa----------acacacacacacacacaca 603

                                                                       
Query: 181 cacacacacacacacacacacacacacctgcaaaggtttcaaatcccagtcttcattctc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 602 cacacacacacacacacacacacacacctgcaacggtttcaaatcccagtcttcattctc 543

                                                                       
Query: 241 tgaataagcatggagtgtgagcatattctctgtgaacatgttcattgccatgtagaccca 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 542 tgaataagcatggagtgtgagcatattgtctgtgaacatgttcattgccatgtagaccca 483

                                                                       
Query: 301 attaaggttactcatgagaagtggagaaaccctgccttttcagatggtttccatacaacc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 482 attaaggttactcatgagaagtggagaaaccctgccttttcaggtgggttccatacaacc 423

                          
Query: 361 atggcattcttctga 375
           |||||||||||||||
Sbjct: 422 atggcattcttctga 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)