BAC Information

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BAC

Clone NameMSMg01-460G11
Chromosome5 (Build37)
Map Location 97,960,580 - 97,961,045
singlet/doubletsinglet
Overlap genenone
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460G11.T7 (MSMg01no460_g11.b1)MSMg01-460G11.TJ (MSMg01no460_g11.g1)
ACCAG545769AG545770
length7151,717
length of high quality
(start - end)
466 (67 - 532)---
definitionCHROMAT_FILE: MSMg01no460_g11.b1 PHD_FILE: MSMg01no460_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:38 2005CHROMAT_FILE: MSMg01no460_g11.g1 PHD_FILE: MSMg01no460_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGTAAACGACTCACAATACAAACAGGAGCCGCGGAATTCACTT
TACCCATAAACTAGAATCATCATTAATTAAGCCTGCTGGGTTGTACAGGT
TTGTCAGGACTAAGTGTAGACAACCCCAGTAGACCTTAGTTAATGGCCAT
AAACCACAGACTTAGATTGAGGAGTTTTTCACAGAAGACAAACTGAGTAT
GCAGATAGCCTAGAACATGGCTCTGCAAAACTCCTACAGACGATGACAAC
ACCAGATTATCGAACTTTCAAATGTTAGAAATAGACATGTCTTTCTTTCT
AATTATGTTAGTTTTAAGAATTCCGTCCTGGCTCTCCCTATAAACTTCTT
ACTTTTTTCCACAGCCTGCCTACAAAGTTAGGGATATGGGCACACTACAC
TTATCTGTATAATGTACTATTTAAGGCCAAATGTTCATCAATGCATGTTT
GGTTTATCACTAAAGTCATCTACTTTTCTGATATATAGACACATCTCTGG
AGATTGAGATATGTTTAATCAAATGCTGATGTATTTCCAGTCTTAGAGAA
CAGATGCGAATGGAGTGACCAAGAGGGGCAGCATCATGCAAACAGGGTGT
GGAAAGCTGAAGAGGGCTTTATGTCTTATTATGAAGAAACATACAAACTA
ACGAGCAAAAGTGTATAAAATTGTCCCACTCCTTTGCGCGATTATTTGAT
GCCATTTCTTTGTAC
TACCTTTATCTAGCTCTACATCTNATTATANATCACACGTATCCNCTCTA
CCCTCCCGCTTCACGCAGGACGCTCACGACGCGTAGGTGTCTGTATTATG
ACTGTTATATCCTTCGCATNGGGTGCTNGCTGTGNTNGCTNCCGCGGCGT
GGAGGAGCGAACCANATGNCATTCAACACGCTTCNTNNNCTATCTCTATC
TGCACACACACGACGACGCTGCACCTACTATATACTCACACGTCTTTATG
ATCGATACTACTACCTCTCGATATCTCGCNTGTGCTACAGNCNTGTTCTG
GTAGTTAATAANGTCTNCGTGTCTGCATCCTGCTCCCGCGCTCGTGGTGC
ACATANGANACNCNCTATGACTACATATCTGCGTNCTAGTCGCTAGCGCT
CTCACTGTCCATCGACATGCGTACATCACGCACNCACCATATCCTAACGC
ATCATCTTTTATATAGTACGATCATANTGACATCTGACTCGTCGCGCTAC
GTGNGTAGGACTCTCGTCAGCTCGCGCTGACGTTCCGACGAATTGTACTA
TCGTGTACCATCGACAGGCAGACTTCGTTGACTATAAGCACTATCTTNGT
CACGCACATACATGCTACGACCTCNCGCTCATGTCACATCGATCGCTCAN
NCGNACCGCACGCACAGANCTCAGNCATCCCACATACCATACTCGTGATA
CGCTANCGCCGATCGCGTGCTGGTCTCAGTCGATATCTACCATCGACACA
TAGTCCANCACGATATCACCCCTCAGTTCTCNTCGATAGNTCACGCGCAT
CGATGTGTGTAGGAGGGTCACGGAGCTGAGNAGTAGTGCGATAGAGACAG
CGCGACGGATACATATAGAGGTGAGTATGAGGATGAAANTCATGTGTCTG
CAGCCAGTTCTTNGCTCAGTCTACATAGTCTCTCTAGCGTACTCGTGTTC
TGTGCAGCGTCGACGTAATACATACAGACGCTATAGAGTAATCACACATA
GTCGATACGCGTACGAGCTGGAGAGGTATGTGGAGACTCGCTTATGCCAT
GTCGACGTACGTCGCTTGACGACTCGCAATGCTCGATCGCGGNCGGAGGC
ACCGCGACTGCATGCAGATGAAGGATCTGTGTGTGTGCTTAGCGATGTAC
ATCACACNATCATATTANAACTACCACGTCGTGAGATCNCCTCNCGTACG
TCTNACACCGCCNCGCACCATACGTCTCATCATCTCTCAATGAGTCTGTA
TCATACATCNATCACANATATCTTTAGACATTCACACAGCCCAACACACG
CACCACACTCGCATATANTGCAGCGCATATANATNTGTACTCGTANTAGT
CTCNCTGACCGCGTGTCGANTACTGTCTGCGCCCTGCACCGAGCGTTGTA
GACGATACATACGCACCTGTATATGTCANATAGATGACACGCCACAGATA
ATGTAACGCTGTGATCATGCTCGTGTCCGTACGACGCCGGCGTACTGCAC
GCGCGGATGATACACAGTCTCGACGTGCTTCTCTACGCTACACATATCGT
ACTATTCCACACCGAGGCNCTCACTCCCTGNCGTCGANTAGCNCTCCATC
ATATATCATCAACGCAGGCCACAGGCTGANATAATAGATGTAATACGTAC
ACGAACNATCTGATATAGACACGCGTGACGTATATAGATGCGTCGTGTAT
ACTTATCAATGTCGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_g11.b1 MSMg01no460_g11.b1 CHROMAT_FILE:
MSMg01no460_g11.b1 PHD_FILE: MSMg01no460_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:38 2005
         (466 letters)



>mm_chr5_97960380_97961245
          Length = 866

 Score =  851 bits (440), Expect = 0.0
 Identities = 460/468 (98%), Gaps = 4/468 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcattaattaagcctgctgggttgtacaggtttgtcaggactaagtgtagacaaccc 60
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 201 tcatcattaattaagcctgctgggttgtacaggtttgccaggaataagtgtagacaaccc 260

                                                                       
Query: 61  cagtagaccttagttaatggccataaaccacagacttagattgaggagtttttcacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtagaccttagttaatggccataaaccacagacttagattgaggagtttttcacagaa 320

                                                                       
Query: 121 gacaaactgagtatgcagatagcctagaacatggctctgcaaaactcctacagacgatga 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gacaaactgagtatgcagatagcctagaacatggctatgcaaaactcctacagacgatga 380

                                                                       
Query: 181 caacaccagattatcgaactttcaaatgttagaaatagacatgtctttctttctaattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | 
Sbjct: 381 caacaccagattatcgaactttcaaatgttagaaatagacatgtctttctttctaa--ag 438

                                                                       
Query: 241 --gttagttttaagaattccgtcctggctctccctataaacttcttacttttttccacag 298
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagttagttttaagaattccgtcctggctctccctataaacttcttacttttttccacag 498

                                                                       
Query: 299 cctgcctacaaagttagggatatgggcacactacacttatctgtataatgtactatttaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctgcctacaaagttagggatatgggcacactacacttatctgtataatgtactatttaa 558

                                                                       
Query: 359 ggccaaatgttcatcaatgcatgtttggtttatcactaaagtcatctacttttctgatat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggccaaatgttcatcaatgcatgtttggtttatcactaaagtcatctacttttctgatat 618

                                                           
Query: 419 atagacacatctctggagattgagatatgtttaatcaaatgctgatgt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atagacacatctctggagattgagatatgtttaatcaaatgctgatgt 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)