BAC Information

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BAC

Clone NameMSMg01-460H18
Chromosome5 (Build37)
Map Location 78,605,667 - 78,780,279
singlet/doubletdoublet
Overlap geneLOC100039398
Upstream geneSpink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneMthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460H18.T7 (MSMg01no460_h18.b1)MSMg01-460H18.TJ (MSMg01no460_h18.g1)
ACCAG545831AG545832
length737734
length of high quality
(start - end)		454 (58 - 511)455 (69 - 523)
definitionCHROMAT_FILE: MSMg01no460_h18.b1 PHD_FILE: MSMg01no460_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:44 2005CHROMAT_FILE: MSMg01no460_h18.g1 PHD_FILE: MSMg01no460_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,605,667 - 78,606,120)(78,779,825 - 78,780,279)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCTT
GCTTGCCATTATGAAAGATTTAGGTTCCTCTTCTGTAATAGAATCTAATA
TAGATACCATGTGCCCTTCTCAAAGTTTTATGACACTAAGATGCCAGGAT
TTGTCAATAAATTAAGTAAAACAAAGCAATCAGATTCTCTAACTTATGTG
TAACTCATCTTTTTCTTTGACTTAAGAGTATCATGACTTTTATCTCTGTT
CATGAAATGACAGCAGGCTTATTTCTTAAACTAAAAGTTATGGAAAACTG
TAATAGAAGACCTTTCATAGTTATTCATAGATGGCTCAGTAGCCCTCTTA
GGCACATGGCTAAACTCTAGTTCACAGCCCCTGCTGAAATTTTGTGTGTC
TATGTGGCTAATATCTGGGTCACACATGGAGTGGAGACAGATGGACCCAG
ATGGATATGTTTGATCTTTCTTTTTCTGCTCCTGAAGGGTGGAAGATCTA
ATGCAGAAGCTGCAAGTTCAAAGAGATGGCAGAGTTATCTAGTAGGGATG
ACTCTAGGTCCTGATAGGAGCCAGAGATCTGGAGACCTTTACTGGATTCT
GAAGAGTCTACCGGGTGAAGAAAAATATTATTTTAATGTGTTTCCAAATT
TTAATGTAACTTTTCTATAAAGCGAAAAGGTCTTAATATTATACCCCCAT
GGGGAATATTCTTTTTCTCGTGAATTTTCATTGGTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAAAACAGTTCACACATCAAGACGATTGGACA
CCAGAGGAAAGTAAGCATGTGGTATCTTTTGTCTCCCCTGATTAGAATGT
ATGTTTAGTCATGAATACTGGAACAAGAACAGGGAGAGAGTTTTAATGTC
CCCGGATTAATTAATGGCTGTTTTCCAGTGGACGTTTGCTATGAGACAAA
TTTAGCTGAAATAATTTCTCCCTGTTTCAGGGAAAGTTTTATTCTCTTTC
CCTAAACTTTGGAGAGCAGTAAAACTCTGAGGGAAAAAAATTGCTCATGA
CAAAGATGTTTCCAACCGTGCTTAATGAGCATTAAACTCAGAAGTTGTCT
GTGTCCTAGAGGAGTCTCTTATGTTCCCTGTTCTGATGCTAGTAGAGTTA
CTTACTGAATATAACCCTAAATATGTAGTTCAAGGGTCAAACTCAACAAA
ACTTCCTGTGATTCAAAATCACCAGGCTCATGACCAAGGATCTGCTGCTT
TTCTATGTCAGCTGGAGCAGGGAAACTTTTTTAAACATATTGCTGAAATT
TCAAGGACTAGGAGATATACTTGAACTTTTTTATATTATTTTTGGAGCGT
GTATCCTTTTTTTTTTTATCTTTCCCTGGGTATTTTTTTTTTGTCAAGAA
TTCTCACAGGTTTTTCCCCACTTCCTTGTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_h18.b1 MSMg01no460_h18.b1 CHROMAT_FILE:
MSMg01no460_h18.b1 PHD_FILE: MSMg01no460_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:44 2005
         (454 letters)



>mm_chr5_78605467_78606320
          Length = 854

 Score =  862 bits (446), Expect = 0.0
 Identities = 452/454 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatgaaagatttaggttcctcttctgtaatagaatctaatatagataccatgtgccct 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatgaaagatttagcttcctcttctgtaatagaatctaatatagataccatgtgccct 260

                                                                       
Query: 61  tctcaaagttttatgacactaagatgccaggatttgtcaataaattaagtaaaacaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcaaagttttatgacactaagatgccaggatttgtcaataaattaagtaaaacaaagc 320

                                                                       
Query: 121 aatcagattctctaacttatgtgtaactcatctttttctttgacttaagagtatcatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcagattctctaacttatgtgtaactcatctttttctttgacttaagagtatcatgac 380

                                                                       
Query: 181 ttttatctctgttcatgaaatgacagcaggcttatttcttaaactaaaagttatggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttatctctgttcatgaaatgacagcaggcttatttcttaaactaaaagttatggaaaa 440

                                                                       
Query: 241 ctgtaatagaagacctttcatagttattcatagatggctcagtagccctcttaggcacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtaatagaagacctttcatagttattcatagatggctcagtagccctcttaggcacat 500

                                                                       
Query: 301 ggctaaactctagttcacagcccctgctgaaattttgtgtgtctatgtggctaatatctg 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ggctaaactctagttcacagcccctgctgaaattttgtgtgtctgtgtggctaatatctg 560

                                                                       
Query: 361 ggtcacacatggagtggagacagatggacccagatggatatgtttgatctttctttttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtcacacatggagtggagacagatggacccagatggatatgtttgatctttctttttct 620

                                             
Query: 421 gctcctgaagggtggaagatctaatgcagaagct 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcctgaagggtggaagatctaatgcagaagct 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no460_h18.g1 MSMg01no460_h18.g1 CHROMAT_FILE:
MSMg01no460_h18.g1 PHD_FILE: MSMg01no460_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:45 2005
         (455 letters)



>mm_chr5_78779625_78780479
          Length = 855

 Score =  857 bits (443), Expect = 0.0
 Identities = 452/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaacagttcacacatcaagacgattggacaccagaggaaagtaagcatgtggtatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 taaaacagttcacacatcaagacgattggacaccagaggaaagtaagcatgtggtatctt 596

                                                                       
Query: 61  ttgtctcccctgattagaatgtatgtttagtcatgaatactggaacaagaacagggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttgtctcccctgattagaatgtatgtttagtcatgaatactggaacaagaacagggagag 536

                                                                       
Query: 121 agttttaatgtccccggattaattaatggctgttttccagtggacgtttgctatgagaca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 535 tgttttaatgtccccggattaattaatggctgttttccagtggacgtttgatatgagaca 476

                                                                       
Query: 181 aatttagctgaaataatttctccctgtttcagggaaagttttattctctttccctaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aatttagctgaaataatttctccctgtttcagggaaagttttattctctttccctaaact 416

                                                                       
Query: 241 ttggagagcagtaaaactctgagggaaaaaaattgctcatgacaaagatgtttccaaccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttggagagcagtaaaactctgagggaaaaaaattgctcatgacaaagatgtttccaaccg 356

                                                                       
Query: 301 tgcttaatgagcattaaactcagaagttgtctgtgtcctagaggagtctcttatgttccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgcttaatgagcattaaactcagaagttgtctgtgtcctagaggagtctcttatgttccc 296

                                                                       
Query: 361 tgttctgatgctagtagagttacttactgaatataaccctaaatatgtagttcaagggtc 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgttctaatgctagtagagttacttactgaatataaccctaaatatgtagttcaagggtc 236

                                              
Query: 421 aaactcaacaaaacttcctgtgattcaaaatcacc 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 aaactcaacaaaacttcctgtgattcaaaatcacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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