BAC Information

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BAC

Clone NameMSMg01-460I14
Chromosome5 (Build37)
Map Location 84,295,835 - 84,296,309
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2, LOC100039608, LOC231368
Downstream geneEpha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460I14.T7 (MSMg01no460_i14.b1)MSMg01-460I14.TJ (MSMg01no460_i14.g1)
ACCAG545871AG545872
length7091,124
length of high quality
(start - end)		581 (41 - 621)---
definitionCHROMAT_FILE: MSMg01no460_i14.b1 PHD_FILE: MSMg01no460_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:48 2005CHROMAT_FILE: MSMg01no460_i14.g1 PHD_FILE: MSMg01no460_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATATTTATCTGTCTGTTCGGTAATTAGAATAAGGTTAAGACAGTGAAGA
ATATGTGCTCTGAGGGTCAATTAGAAAGCTGTAGAAAATCATGTGGAAGT
TTCCATACATACCCATCCAGTTGTGTTGGAGGACTGTAGGTCAGCATGCC
CCACAGATAATTTTCTTCTGGTGTGAAGCACTATTTACAGTGATCCCATT
TAGTGAATGCTATTTTTGTCTTATTAATTATCTAATTGCTTATCATGTTT
ACTATTAGTTACTGCGGTGTCAGGGAAGGCATTGCAGCAGAAGCAGGGTG
TTGCTGACCACATTGCATCTGCAATTGGAAAGCAGAGTGAGCAATAAACC
AGTTGGGCCTATAGAACCTTAACCACACCTCACACCTAGTGATCCACATC
CTCCAGTGATGCTGCATCACCTAAAGGATTCACATCCTACCCAGACATTG
TCACAAGCTAGAAACCACGTCTTCAGTCACGAGAAATAGATCCCATTAAA
AGCACAGGTTGTTTTCAAGTATTTTTAGGAAAAGAAATTGGTTTCCTAAT
TTTGTGATATATGATTTTAAAAGTATTAAAATGTCTAAAAGATCACTTAT
TACTAATGAGTATTCACAACAAACAAACAAACTAACAACAAACAAACATG
TTTTAAGGA

ACCTAACACATTACCACGGTTTATTTCACTATCTCTTATTCACGTCGGGG
TCTGCGCATTTTGTCACCACCCCTACAATCTCATATACCATTCACCCCTT
ACAGCCCTCNTCTCTCTTGCATAACATTAATATCAACCCAAATACTACTC
TCCACCTCCTTCCTATTCCCATCTTATGTACTTACGTCAACCACCACTCT
CTATATCCTCTGCTCATATCATCATTATATAACATATTATAGTAATTTTC
TTTTATACCCCTATATCTTCACTCACACACGTAATATCAATACATACATC
TCTATCACTTCCTCTTACTCTNGTTTATATCACAATCATGAAAATTTACA
CACGATAACACGCACATTAAGTACTCCTCTATATNGACTTACATCTCGTA
ANAACGCTACAATGGAATTAATAATGTAATACATAAGTCATATGTAGACA
TACTAACTAAACGGAGGATACCAGATATTACACGTTTTACTCTACGTTAT
CCATTATACCCATGCTAAATCATATATAATGAATATATTTACTCTATCCC
TATAATCTATAATCTATCACNCTATATTCCAATTTATTCACCACTCGACT
AATATTACAATCTTCATACCCTGTACATCACAACACACATCATCAAACTA
ATACCCTAAATATACCTCATGCATATTTTATACTATTAATATAACAAATA
TCTGTCAATATCATACCATCATCTACACCATCCACATTTAAACAATATAA
CATAATGTATACTAATATATATTCTCACATACACTATTCTCACTCACCAC
ATTATTATTCTATTCCATAAACTATATCACCAATTAAACTCATATAGTAT
CCTACTCACACACCACAACTTACTACATATATATTCTCCTCACTCATTCA
TATCTATCATTCTATATATAATACACATTTGATATGACATCTACTCCTTA
TGTCGTTATACCTCATCGTAATTATATACCTNCATCCTCTACCTTATCTT
CACACACAATATTAATATATAATCTCATTCACTATTTCAACACCATTATA
GCACACATTTACAGTGCTATCGCGTGATGCAAGATATATAATCCATTCAT
AATATCTCCTCACCACCTATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_i14.b1 MSMg01no460_i14.b1 CHROMAT_FILE:
MSMg01no460_i14.b1 PHD_FILE: MSMg01no460_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:48 2005
         (581 letters)



>mm_chr5_84295835_84296813
          Length = 979

 Score =  791 bits (409), Expect = 0.0
 Identities = 459/477 (96%), Gaps = 4/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatatttatctgtctgttcggtaattagaataaggttaagacagtgaagaatat 64
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattcaatagagatctgtctgttcggtaattagaataaggttaagacagtgaagaatat 416

                                                                       
Query: 65  gtgctctgagggtcaattagaaagctgtagaaaatcatgtggaagtttccatacataccc 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtgctctgaggatcaattagaaagctgtagaaaatcatgtggaagtttccatacataccc 356

                                                                       
Query: 125 atccagttgtgttggaggactgtaggtcagcatgccccacagataattttcttctggtgt 184
           ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 355 atccaattgtgttggaggactgtaggtcagcatgccccac--ataattttcttctggtgt 298

                                                                       
Query: 185 gaagcactatttacagtgatcccatttagtgaatgctatttttgtcttattaattatcta 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaagcattatttacagtgatcccatttagtgaatgctatttttgtcttattaattatcta 238

                                                                       
Query: 245 attgcttatcatgtttactattagttactgcggtgtcagggaaggcattgcagcagaagc 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 237 gttgcttatcatgtttactattagttactgcggtgtcagggaaggcattgcagcagaggc 178

                                                                       
Query: 305 agggtgttgctgaccacattgcatctgcaattggaaagcagagtgagcaataaa--ccag 362
           |||||||||||||||||||||||||||||||  ||||||||||||||||| |||  ||||
Sbjct: 177 agggtgttgctgaccacattgcatctgcaatcagaaagcagagtgagcaaaaaaaaccag 118

                                                                       
Query: 363 ttgggcctatagaaccttaaccacacctcacacctagtgatccacatcctccagtgatgc 422
           |||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct: 117 ttgggcctatagaaccttaatcacacctcacacctagtgatccacgtactccagtgatgc 58

                                                                    
Query: 423 tgcatcacctaaaggattcacatcctacccagacattgtcacaagctagaaaccacg 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  tgcatcacctaaaggattcacatcctacccagacattgtcacaagctagaaaccacg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 979
Length adjustment: 10
Effective length of query: 571
Effective length of database: 969
Effective search space:   553299
Effective search space used:   553299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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