XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TATGCACACCAGGTTGTCCTCAAACTCAGAGAACCACCTGTGTCTTACTT
AGGGATTTATATCTGTGAGCAGACACCATGACCAAGGAAACTCTTATAAG
GACAACATTAATTGAGGCTGGCTTACAGGTTTAGAGGGTCAGTCCATTAT
CATCAAGGTGGGAGCATAGCAGTGTCCAGGCAGGCAGACATGGTACAGGA
GGAGCTGAGAATTCTACATCTTCCTCTGAAGGCTTCTAGCAGAATACTTA
CTGGCTTCCAGGCAGCTAGGACAAGGGTCTTAAAGCCCACATCCACAGTG
ACACATCTACTCCAACAGGGCCACACCTCCCAATTGTGCCACTCCCTGGG
CCGAGCATATGCAAACCATTACAACCTGCCTCTTGTACACCATCATGTCC
AGCCTGCTCTGTTAATGAAAAGTGGAGTTTGCTTTTTATAATTAGCATGC
ATCACACATATAATGGCTTCTGTGACATTTTTATACATATATGATACCTT
TTGATCATGTTTACCTCTGCTCTCATCCTAGCCCACTCCTGCTGACCCTT
CCTTTTCTCAAATTATGCCCCCCCACAACCTTAATGCCTTTTTGGTAGTT
GGGGTGGACCATTAAATCTGATTAGGGATGCTTACCTGAGCCAAAGTTAG
GGGTTATAAGCAACCTAACAGT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATACAGAATTGCTTCTGACCAAGGAACGCATTT
CACAGCCAGAGAAGTGCAACCATGGGCCCACAATCCACTGGTAGTACCAT
GCTCCCTACCATGCTGAAGCAGCTGTCCTGACAGAAAGATGGAATGGCCT
TTTGAAGACGCAGTTACAGTGCCAGTTAGGTGGCAGCAGCATTGAGGGGC
AGGGCAGAGTTCTTCAGAAGGCAGTATATGCTTTGAATCTGTGTCTGATA
TAGGTACAGTTTCTCTCACAGTCGGGATCCACGGGTCCAGGAATCAAGGG
TGGGAAAGGGAAGAGTTTCACTCACTATCGCTCTTAGTCACCCACTAGGA
ACTTTTTTGCTTCCTGTCTCCACAACCCTAAGTTCAGCTAGCCTAGAAAA
TTTGGTTCCAGAGGGGAGGAGTGCTCTTCCCAGGAGCCACAACAAACATT
CTGTGCCTTTCCCCAGCCTTGAGAAGGCTAAAGAGACCTTAAGTATTTGC
CACAGCTGGGCCTTAATGACCCAGGCAGAGTCCTGATGTTTGTGCAGGAA
TAGAAACCCCGACTAAGACAAATTGGTACCAGCATAGTGGGGTATTCCTG
TGACAACCTGACCATGGTTTGGCCAGGACTGTGGAAGGACTTTAAAACTT
TGGACCACAACACCCTTGCTAAA

Query= MSMg01no460_j02.b1 MSMg01no460_j02.b1 CHROMAT_FILE:
MSMg01no460_j02.b1 PHD_FILE: MSMg01no460_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:51 2005
         (611 letters)



>mm_chr5_28054435_28055444
          Length = 1010

 Score = 1056 bits (546), Expect = 0.0
 Identities = 594/610 (97%), Gaps = 6/610 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtatgcacaccaggttgtcctcaaactcagagaaccacctgtgtcttactta 63
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 ggaattcagtatgcagaccaggttgtcctcaaactcaaagaaccacctgtgtcttactta 264

                                                                       
Query: 64  gggatttatatctgtgagcagacaccatgaccaaggaaactcttataaggacaacattaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggatttatatctgtgagcagacaccatgaccaaggaaactcttataaggacaacattaa 324

                                                                       
Query: 124 ttgaggctggcttacaggtttagagggtcagtccattatcatcaaggtgggagcatagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgaggctggcttacaggtttagagggtcagtccattatcatcaaggtgggagcatagca 384

                                                                       
Query: 184 gtgtccaggcaggcagacatggtacaggaggagctgagaattctacatcttcctctgaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtccaggcaggcagacatggtacaggaggagctgagaattctacatcttcctctgaag 444

                                                                       
Query: 244 gcttctagcagaatacttactggcttccaggcagctaggacaagggtcttaaagcccaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttctagcagaatacttactggcttccaggcagctaggacaagggtcttaaagcccaca 504

                                                                       
Query: 304 tccacagtgacacatctactccaacagggccacacctcccaattgtgccactccctgggc 363
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 505 tccacagtgacacatctactccaacagggccatacctcc-aattgtgccactccctgggc 563

                                                                       
Query: 364 cgagcatatgcaaaccattacaacctgcctcttgtacaccatcatgtccagcctgctctg 423
           |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 cgagaatatgcaaaccattacaacctgcctcttatacaccatcatgtccagcctgctctg 623

                                                                       
Query: 424 ttaatgaaaagtggagtttgctttttataattagcatgcatcacacata-taatggcttc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 624 ttaatgaaaagtggagtttgctttttataattagcatgcatcacacataataatggctgc 683

                                                                       
Query: 483 tgtgacatttttatacatatatgataccttttgatcatgtttacctctgctctcatccta 542
           |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtgacatatatatatatatatgataccttttgatcatgtttacctctgctctcatccta 743

                                                                       
Query: 543 gcccactcctgctgacccttccttttctcaaattatgccc-ccccacaaccttaatgcct 601
           ||||||||||||||||| ||||||||||||||| || ||| |||| ||||||||||||||
Sbjct: 744 gcccactcctgctgacctttccttttctcaaat-at-ccctcccc-caaccttaatgcct 800

                     
Query: 602 ttttggtagt 611
           ||||||||||
Sbjct: 801 ttttggtagt 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space:   601000
Effective search space used:   601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)