Query= MSMg01no460_j12.b1 MSMg01no460_j12.b1 CHROMAT_FILE:
MSMg01no460_j12.b1 PHD_FILE: MSMg01no460_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:53 2005
(427 letters)
>mm_chr5_22515254_22516079
Length = 826
Score = 795 bits (411), Expect = 0.0
Identities = 423/429 (98%), Gaps = 5/429 (1%)
Strand = Plus / Plus
Query: 1 ttttccttattgcttagtacacgcataaggagacttaggatcgcacatacagaggtacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttccttattgcttagtacacgcataaggagacttaggatcgcacatacagaggtacat 260
Query: 61 gaatgaactggctttgttattagagacaactcagccaactgaagaactgtaaggaatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgaactggctttgttattagagacaactcagccaactgaagaactgtaaggaatgat 320
Query: 121 tgcattctaatatgtctctcactcgacagtcctcatttttccattttcactggggatact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcattctaatatgtctctcactcgacagtcctcatttttccattttcactggggatact 380
Query: 181 ctagaaaaccaaaactgattcctctggggagagagtatctaaggaaagaattctctttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagaaaaccaaaactgattcctctggggagagagtatctaaggaaagaattctctttct 440
Query: 241 gta--tttttttcccttaagtttaaaaaaaatcagagggtttccttgctggctaatcact 298
| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaatttt---cccttaagtttaaaaaaaatcagagggtttccttgctggctaatcact 497
Query: 299 ctttgatggtgtggttttaatgacacttttcttcttaagttgggtgaataaaagcttggt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctttgatggtgtggttttaatgacacttttcttcttaagttgggtgaataaaagcttggt 557
Query: 359 gtgaatggggagatgaatggcagccatcataaagcttcatactgacaagaccttgctcat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtgaatggggagatgaatggcagccatcataaagcttcatactgacaagaccttgctcat 617
Query: 419 cctctatgg 427
|||||||||
Sbjct: 618 cctctatgg 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 826
Length adjustment: 9
Effective length of query: 418
Effective length of database: 817
Effective search space: 341506
Effective search space used: 341506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_j12.g1 MSMg01no460_j12.g1 CHROMAT_FILE:
MSMg01no460_j12.g1 PHD_FILE: MSMg01no460_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:53 2005
(452 letters)
>mm_chr5_22705737_22706588
Length = 852
Score = 843 bits (436), Expect = 0.0
Identities = 442/446 (99%), Gaps = 4/446 (0%)
Strand = Plus / Minus
Query: 1 aaattgccagtccctggtctgagtacttggtattggaatagagttttaactaaatattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaattgccagtccctggtctgagtacttggtattggaatagagttttaactaaatattga 387
Query: 61 agatgagtcagccataggaggatttcaaaagacagttgacagtgtggtgcaaggagggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agatgagtcagccataggaggatttcaaaagacagttgacagtgtggtgcaaggagggac 327
Query: 121 tgaaggaaggaacattcaatagaattagaatcagcaaatggttctgagaggggaggcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgaaggaaggaacattcaatagaattagaatcagcaaatggttctgagaggggaggcttc 267
Query: 181 tgtgatgttctcagtgaatcaagaagaaaaagccttggtgttccatgaggtgtgagagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtgatgttctcagtgaatcaagaagaaaaagccttggtgttccatgaggtgtgagagtc 207
Query: 241 tcagga----acacacacacacacacacacacacacacacacacacacacacacacacac 296
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcaggaacacacacacacacacacacacacacacacacacacacacacacacacacacac 147
Query: 297 acacacacacacattcacgcatgtgcattcacacacatacacacatgcatactcacatgt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 acacacacacacattcacgcatgtgcattcacacacatacacacatgcatactcacatgt 87
Query: 357 acacatacacacttgcacacatttacaggcacatacataatgcatgcacacaatgacaca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 acacatacacacttgcacacatttacaggcacatacataatgcatgcacacaatgacaca 27
Query: 417 cccagaggcacatacaccattcttat 442
||||||||||||||||||||||||||
Sbjct: 26 cccagaggcacatacaccattcttat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
