Query= MSMg01no460_l05.b1 MSMg01no460_l05.b1 CHROMAT_FILE:
MSMg01no460_l05.b1 PHD_FILE: MSMg01no460_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:02 2005
(553 letters)
>mm_chr5_5577449_5578401
Length = 953
Score = 377 bits (195), Expect = e-108
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 359 aatattttgccttttaagggaggagcctcctaagctctggaaggcagctggcattagtga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aatattttgccttttaagggaggagcctcctaagctctggaaggcagctggcattagtga 618
Query: 419 gatgaccaacattcaagaggctcaagaggtatcatggttttccttcggaaacagtttaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gatgaccaacattcaagaggctcaagaggtatcatggttttccttcggaaacagtttaat 678
Query: 479 gattttcataacctgtcacaagtgattacagttcaatagttcagtgccataaagcaagac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gattttcataacctgtcacaagtgattacagttcaatagttcagtgccataaagcaagac 738
Query: 539 tatataattttggcc 553
|||||||||||||||
Sbjct: 739 tatataattttggcc 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_l05.g1 MSMg01no460_l05.g1 CHROMAT_FILE:
MSMg01no460_l05.g1 PHD_FILE: MSMg01no460_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:02 2005
(532 letters)
>mm_chr5_5708073_5709004
Length = 932
Score = 973 bits (503), Expect = 0.0
Identities = 515/519 (99%), Gaps = 1/519 (0%)
Strand = Plus / Minus
Query: 15 tagaaataaacgatgctctgctttcataaaatttgaacattttacttaactatattttaa 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 tagaaataaacgatgctctgctttcataaaatttgaacattttacttaactatattttaa 873
Query: 75 aaataagtgagctaggccaaatataaaaatatttagaaatgagtagaattttaaaaatta 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aaataagtgagctaggccaaatataaaaatatttagaaatgagtagaattttaaaaatta 813
Query: 135 ataagacgtagggaagatctgggacgagctggggtagaagaaaaacatgatcaaaacact 194
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 812 ataagacgtagggaagatctgggacgagctggggtagaagaaaaacatgatcgaaacact 753
Query: 195 gttatg-aaaaaatctagttaaaaataaattaatcaaattttaaaaaggttaataaaaca 253
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gttatgaaaaaaatctagttaaaaataaattaatcaaattttaaaaaggttaataaaaca 693
Query: 254 gagcttcaaacagacttcggttttcacatctttgtccttgctaatccctctgatccctca 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gagcttcaaacagacttcggttttcacatctttgtccttgctaatccctctgatccctca 633
Query: 314 cagtcacgaaggtcaaacactgtgtttatagaacctgcagttggatttgcttcttagagc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cagtcacgaaggtcaaacactgtgtttatagaacctgcagttggatttgcttcttagagc 573
Query: 374 tagtttctctggttctgacaaacagggtttataactctggagacaacttaattattttca 433
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 572 tggtttctctggttctgacaaacagggtttataactctggggacaacttaattattttca 513
Query: 434 gaacctggtatcttaacctgagcatcaagtggatgatgaaatagtaagaaactgtgaaat 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaacctggtatcttaacctgagcatcaagtggatgatgaaatagtaagaaactgtgaaat 453
Query: 494 gaagtctttgtgactttttgaagtaacagcactaggaag 532
|||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaagtctttgtgactttttgaagtaacagcactaggaag 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
