TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCTCCTACTTTACAGCATAGTACCTTCACAGGACGAAGGGCCTCATCT
CCTCCCATTGAAGACTGACTAGGCCAGCCTCTGCTACATATGCAGCTAGA
GGCACGAGTCCCTCCCTGTGTTTTCTTTGATTGGTTGTTTAGTCTTAGGT
AGCTCTGGGTTTACTGGATATTTCATATTGTTGTTCCTCCTAGGGGGCTG
CAAACCCCTTCAGCTCCTTGGATACTTTTCTAGCTTCTTCACTGGGGACC
TTGTACTTCATCTAATTTTATGACTGTGAGCATCCACATGTGTAATGGGG
TATAGAGCTAAACAAAGAATTCTCAACTGAGGAATACCAAATGGCTGAGA
AGCACCAAAAAATGTTCAACAACCTTAGTAATCAGGGAAATTGCAAATCA
AACAACCCTGAGATTTCACATCATACCAGTCAGAATGGCTAAAATCAAAA
ACTCAGGTGACAGCAGATGCTGGAGAGGATGTGGACAAAGCAGAATACTC
CCCCATTGCTGGTGGGATTGCAAGCTGGTACAGCCACTCTAGAATTCAGT
TTGGAGGTCCCTCAGAAAATTGGATATAGCTCTACTGCCATATACATTTA
TACCCTTTCTGTCCATTTACCCCAAAGGGCTCCATTTCCACCAATGGTGC
TGGGTACAACGGATACTTATTCCGTTTTAGTATTG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCTCTCACATTCTAAGAATGG
ATATACTCTTTCACTGAATTATACCTCCAGCCTTTATCCTAACATCTGAT
GTGAATATATATGATGAGTAACTTAGTTCATCTCTGACTAGTTTACATGA
CTTATATTTTCTCAATGATGTAAATCACATTGTGTAAAGATGAAATTTAG
ATTTTATTAAAATATGCAAAATATTTAAAATAGAGTGGGAATACATAAAA
GAGACTTTTGGAAAATTTCAGTAGAGGATTTTGTTGCTGTGGTTAAGATT
TATTTCTTTTATTTATATGACTACATGGTAGCTGTCTTCAGACTCACCAA
AAGAGGGCATTGGATTCCAATACAGATGGTTGTAAGCCACCATGTGGTTG
CTGAGAATTCAACTCAGGACCTCTGGAAGAATAGTCAGTGCTCTTACCAT
TGAGTCATCTCTCCAACCTCCAGTAGGATTTCTTATCCAATGGATAAAAT
GAAGATTCTAAGGTAGTTATGAGAAGAGGGGAACAATGAATAATTTAAAA
TTCAGGTAAAAGGCATGAAGTACAAATCTCCCGATGTACGACAGTGATTT
TGATTGTAGCCTAANAAATGATCCTACCTTCCCACAAAAAAAAGTTTTCC
TACTCCCATCCTATGAAAAGCCCAATAAAATTTCTG

Query= MSMg01no461_e18.g1 MSMg01no461_e18.g1 CHROMAT_FILE:
MSMg01no461_e18.g1 PHD_FILE: MSMg01no461_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:51 2005
         (478 letters)



>mm_chr5_41247642_41248519
          Length = 878

 Score =  899 bits (465), Expect = 0.0
 Identities = 468/469 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcctctcacattctaagaatggatatactctttcactgaattatacctccagccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 caggcctctcacattctaagaatggatatactctttcactgaattatacctccagccttt 410

                                                                       
Query: 61  atcctaacatctgatgtgaatatatatgatgagtaacttagttcatctctgactagttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atcctaacatctgatgtgaatatatatgatgagtaacttagttcatctctgactagttta 350

                                                                       
Query: 121 catgacttatattttctcaatgatgtaaatcacattgtgtaaagatgaaatttagatttt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 349 catgacttatattttctcaatgatgtaaatcgcattgtgtaaagatgaaatttagatttt 290

                                                                       
Query: 181 attaaaatatgcaaaatatttaaaatagagtgggaatacataaaagagacttttggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 attaaaatatgcaaaatatttaaaatagagtgggaatacataaaagagacttttggaaaa 230

                                                                       
Query: 241 tttcagtagaggattttgttgctgtggttaagatttatttcttttatttatatgactaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tttcagtagaggattttgttgctgtggttaagatttatttcttttatttatatgactaca 170

                                                                       
Query: 301 tggtagctgtcttcagactcaccaaaagagggcattggattccaatacagatggttgtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tggtagctgtcttcagactcaccaaaagagggcattggattccaatacagatggttgtaa 110

                                                                       
Query: 361 gccaccatgtggttgctgagaattcaactcaggacctctggaagaatagtcagtgctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gccaccatgtggttgctgagaattcaactcaggacctctggaagaatagtcagtgctctt 50

                                                            
Query: 421 accattgagtcatctctccaacctccagtaggatttcttatccaatgga 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  accattgagtcatctctccaacctccagtaggatttcttatccaatgga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)