BAC Information

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BAC

Clone NameMSMg01-461H18
Chromosome5 (Build37)
Map Location 115,079,750 - 115,079,940
singlet/doubletsinglet
Overlap geneTrpv4
Upstream geneCmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022
Downstream geneGltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461H18.T7 (MSMg01no461_h18.b1)MSMg01-461H18.TJ (MSMg01no461_h18.g1)
ACCAG546596AG546597
length764762
length of high quality
(start - end)
283 (72 - 354)192 (121 - 312)
definitionCHROMAT_FILE: MSMg01no461_h18.b1 PHD_FILE: MSMg01no461_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:06 2005CHROMAT_FILE: MSMg01no461_h18.g1 PHD_FILE: MSMg01no461_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATGCGCGGAAT
TCACTCTGTTTACAGAGATTGCCTCGTACACCCAGAGATCCACCTGCCTC
TGCCTCCACAGTGCTGGGATGAAAGATGTTCACCTCCAAGCCCAGCCTTC
CTGGTGTTTGTAACTAACATCTAGGGAACTTTGTTTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTTTTTCCTTGCAGAAGTCTCAGAAGCCATGTTGTCAGAAGCCCTGCTGG
TGTCCGCCCCGGTTTTATTTATCCTCCATGGAGAACACGCTGTGGTCCAT
GGCAAGGTATAAAGTCCCCAGGGAGCTGGGTAGTGGTGGCGCATGCCTTT
AATCCCAGTTCTGAACTTGAGACCAGCCTGGTCTACAGAGTGAGTTCCAG
AACAGCCATGGTTATCCAGAGAAACCCTGTCTCTAAAAAATAAACAAATC
AATAAAAGCTCCCAGTGACTTGTACGATGGGGCAATACGTCTTTCATAAC
CTGGATTGCAAGAAGTTAAAAAATAGGTCTAAGGTGTTCTATGGATTATA
ATTTTTCACCGGAAAAAATCTTAACTTGGGCCCACACTGTTACAATATTT
TTTATGTTGGGTGATAAAACCCACCAAGATTGTATGTAATATACCTACAA
ATTTGTCCCTTTGTATGTATAAAGTCTATTTATTTTTTGTTTTCTCACAC
TCTTCTTTTTACTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCCCAAAATTCTCTCTTCGTCGATGGCTCCTTCCAGTTACTC
TAGTGAGTACAAGTCTCACGGCAAACACTTCTGAGGAGAGGTGACATTAT
CAGGAATGACTTCACCCAGCCGGGCAGCCATAATCAAACAGCTGGGCAGG
GCCAAGGCTTGCTTGCTAGGGGGTTGATCCATACCATGGGGAGAATTAAT
TTTGACCTCTTACACTGATTGAATGCTATGGTCTGCTTGTGATTAAGAAT
TGTAATACTATTNNCTTTTAGTGGGGAGAAGTGCAGCCATCGATTATTGA
TGTCTGTCCAGGTCACAGAATGTGGGAATCAATGTATGTGTGCTACATCT
TGTCCAACAATGACATCTTAGCCACAAAATCTCCACAGACCTCTGAATCA
ATCTTTCTTTTCTTTTTCCTTTCCCACTTTTTTAAAACCATTTTCTTTCA
TATCAATTATTACTTATTCGCGCATATGTATGCTCACGAGGAGTCCTGCC
ACATCACATCACCTGCAGCTAAAGGCAGCTGTGAGCTTACCTGATACAGG
TGTTTTTAATCCAACTCATATCCCTCCACCAAGGACAGCGTTGTACTCTT
TTTTCTGCGAACCCGTTTCCATCTCGCCCCTTGATTCTTCTTCTCTAACA
ATTCCAATAATGCGTTGGCTCTTTGTATTTCCCCGCTTTTCGCTCCAATC
ATATTTCTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_h18.g1 MSMg01no461_h18.g1 CHROMAT_FILE:
MSMg01no461_h18.g1 PHD_FILE: MSMg01no461_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:06 2005
         (192 letters)



>mm_chr5_115079550_115080141
          Length = 592

 Score =  323 bits (167), Expect = 4e-93
 Identities = 185/191 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaacacttctgaggagaggtgacattatcaggaatgacttcacccagccgggcagcca 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 391 gcaaacacttctgaggagaggtgacactatcaggaatgacttcacccagccaggcagcca 332

                                                                       
Query: 61  taatcaaacagctgggcagggccaaggcttgcttgctagggggttgatccataccatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 331 taatcaaacagctgggcagggccaaggcttgcttgctagggggttgatccataccatgga 272

                                                                       
Query: 121 gagaattaattttgacctcttacactgattgaatgctatggtctgcttgtgattaagaat 180
           |||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 271 gagaaagaattttgacctcttacactgattgaatgctagggtctgcttgtgattaagaat 212

                      
Query: 181 tgtaatactat 191
           |||||||||||
Sbjct: 211 tgtaatactat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)