BAC Information

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BAC

Clone NameMSMg01-461K12
Chromosome5 (Build37)
Map Location 126,114,671 - 126,115,151
singlet/doubletsinglet
Overlap geneTmem132b
Upstream geneAtp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461K12.T7 (MSMg01no461_k12.b1)MSMg01-461K12.TJ (MSMg01no461_k12.g1)
ACCAG546728AG546729
length715736
length of high quality
(start - end)
265 (317 - 581)484 (77 - 560)
definitionCHROMAT_FILE: MSMg01no461_k12.b1 PHD_FILE: MSMg01no461_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:20 2005CHROMAT_FILE: MSMg01no461_k12.g1 PHD_FILE: MSMg01no461_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATAATTGCGGCGCTAAAGGAGTCCTATTTCTTCAGTGCGCGGAANNC
ANTATTTGCATAACACTGGGTGCTCTTGATCAGGTTTTCTTGGGGTTTTC
TTGATCAGATTATCCGAATCAGGAAGATTCACCCTAAATTTGGGGTGGGA
CCTTCTGGTGGCAACCCAGATTTAAGGACTTGGAAGAAGGAAGCTTTGAT
TTTTGTCTGTTTGTCTTCACTCTCACTGGCAAGGTCATCTCTCCTGTGGC
TGCTGCATTCCTTTGCCAATATTAGAACCACCTTCTTTGATAACTCGTTG
TAGACTGAAGTCCTTCACTTCCAGGAAACTTCCTGGCCTTCAGCACCAGG
TTGGGATTGCTGGGCCATCAAGCATCATGGACTGAGCAGTCCATGTGGTT
CTTCCATGCAAGACAGCCATTGTTAAATTATCCAGAAAGTGTCCTGTATG
CCAATCAAATTCTCTTGTAACGTATATGGTGGTTTGAATTCCTTTTTAGA
GTATGTAGTATTAATGCAGCTTGAACAGGAATGGCTACCGTAAATTCGTG
TGTTTTAATGCTTGGCCTGTATGGAGTGATACTATTAGGAGGTGTGGCCT
TGTTGAAATAGGTGTGGGCCTGCTGGAGTATTTGTGTTTCTGTGGTGCCT
GAGCTTTTACATATCTACGCGCATGTTTGCTCATGTAATAGACAGCCCTT
TTCTGTTGTCTTCTG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCAGCCTGTTCTACATAGCG
AGTTCCAGGACAGTCAAGGCTGATACATCATGAGACCCTGTATCAAATAA
ATAAATTAAGCTAAGTAAGTAAGTTTTAGCTGAGACAGATGGTCAGACAG
GTTGATAATTTCCCCTGGTGGCACCTGACTTACTTGGCCTCCCCATGTGC
CATTAAGGGGATGCTCACACCTGCACACAGAAGACCCTGCCCATCCCCGA
TCTTGGAGCTGAGCCCCTTTATTCTCAGAGATCTTCTTGTTTCTTTAGAA
TTTCCCATTCTCTCTCTGACTCAAAGGCCAAAAATAAATGTATTTTCAGC
ATCCACTCCCAAGAGTGCAGGAGGGAGACTTTGTCTGCTCTGCAGGTGCC
AAGGCAGGTCTTGTGGGGCAGGTGCTGGAAGAAGGTCTCATCACATGAAT
TTTTTTCTCTTCCATATTTCAAATTTAAATAGTTGTTCAAAAACGTGCTC
TCGGCATGCCTTGCCTCCTCTAGACCCCAGATACCTGGTGAAAGAATTAA
GGGAGGGGAGGTCTTTATGTGCATGTCCATGTAGTCCTCCGCTTTTTCCT
GAACAGGGCGTCAGACTTTCCCTTGGCATCTGTTCGCTACAGTTTTCTTG
TTATTTTTCCCGCTTTGCCTTCCTTTTCCCCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_k12.g1 MSMg01no461_k12.g1 CHROMAT_FILE:
MSMg01no461_k12.g1 PHD_FILE: MSMg01no461_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:20 2005
         (484 letters)



>mm_chr5_126114471_126115353
          Length = 883

 Score =  810 bits (419), Expect = 0.0
 Identities = 467/483 (96%), Gaps = 3/483 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagccagcctgttctacatagcgagttccaggacagtcaaggctgatacatcatgagac 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagccagcctgttctacatagtgagttccaggacagtcaaggctgatacatcatgagac 260

                                                                       
Query: 61  cctgtatcaaataaataaattaagctaagtaagtaagttttagctgagacagatggtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtatcaaataaataaattaagctaagtaagtaagttttagctgagacagatggtcag 320

                                                                       
Query: 121 acaggttgataatttcccctggtggcacctgacttacttggcctccccatgtgccattaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 acaggttgataatttcccctggtggcacctgacttacttggcctcctcatgtgccattaa 380

                                                                       
Query: 181 ggggatgctcacacctgcacacagaagaccctgcccatccccgatcttggagctgagccc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggatgctcacatctgcacacagaagaccctgcccatccccgatcttggagctgagccc 440

                                                                       
Query: 241 ctttattctcagagatcttcttgtttctttagaa-tttcccattctctctctgactcaaa 299
           | | |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||
Sbjct: 441 catgattctcagagatcttcttgtttctttagagctttcc-attctctctctgactcaaa 499

                                                                       
Query: 300 ggccaaaaataaatgtattttcagcatccactcccaagagtgcaggagggagactttgtc 359
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 500 ggccaaaaataaatgtattttcagcatccattcccaagagtgcaggagggagacttcgtc 559

                                                                       
Query: 360 tgctctgcaggtgccaaggcaggtcttgtggggcaggtgctggaagaaggtctcatcaca 419
           |||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 tgctctgtgggtgccaaggcaggtcttgtggggcaggtgctcgaagaaggtctcatcaca 619

                                                                       
Query: 420 tgaatttttttctcttccatatttcaaatttaaatagttgttcaaaaacgtgctctcggc 479
           |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 620 tgaatttttt-ctcttccatctttcagatttaaatagttgttcaaaaacgtgctctcggc 678

              
Query: 480 atg 482
           |||
Sbjct: 679 atg 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space:   413802
Effective search space used:   413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)