Query= MSMg01no461_m24.b1 MSMg01no461_m24.b1 CHROMAT_FILE:
MSMg01no461_m24.b1 PHD_FILE: MSMg01no461_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:33 2005
(484 letters)
>mm_chr5_48472969_48473850
Length = 882
Score = 770 bits (398), Expect = 0.0
Identities = 459/482 (95%), Gaps = 6/482 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaaacatcttccttcattcatgagcctggtacctaatcttggtaaattgtaata 64
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcaaaacatctttcttcattcatgagcctggtacataatcttggtaaattgtaata 264
Query: 65 tttgctgttacttggaactgtcttaaattaaactctaccacaatttctcatcctgaaggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgctgttacttggaactgtcttaaattaaactctaccacaatttctcatcctgaaggt 324
Query: 125 cgggtgctattgataagtttgtctcatatttctactgctgcaatatcaggaaggaaaatg 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 325 cgggtgctattgataagtttgtctcatatttctactgctgcaatattgggaaggaaaagg 384
Query: 185 aagctagctactttgacctggaaatttcatgctctttctaaactttaaaataagcactgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagctagctactttgacctggaaatttcatgctctttctaaactttaaaataagcactgt 444
Query: 245 cattacataagagaataatagttcaatacttaacatctctcttttttaaatgtgagagct 304
||||| |||||| |||||||| | ||||||||| ||| |||||||||||||||||||||
Sbjct: 445 cattatgtaagaggataatagtccgatacttaacgtctttcttttttaaatgtgagagct 504
Query: 305 gtgagtgcccttatggcaaaaacaaacttgttttataatactgactgataggttgttctt 364
||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||
Sbjct: 505 gtgagtgcccttatggcaacaacaaacctgttttataatactga----taggttgttctt 560
Query: 365 gattttgctttggagatatttttt--ctctttcaaattataacttactttagaatcaagt 422
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 561 gattttgctttggagatattttttttctctttcaaattataactcactttagaatcaagt 620
Query: 423 tagagagagaaatattcgagatatgctttcttcatctactagagcattatcctaatgctg 482
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 621 tagagagagaaatattcgagatatgctttcttcatctgctagagcactatcctaatgctg 680
Query: 483 aa 484
||
Sbjct: 681 aa 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 882
Length adjustment: 10
Effective length of query: 474
Effective length of database: 872
Effective search space: 413328
Effective search space used: 413328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_m24.g1 MSMg01no461_m24.g1 CHROMAT_FILE:
MSMg01no461_m24.g1 PHD_FILE: MSMg01no461_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:33 2005
(114 letters)
>mm_chr5_48652948_48653461
Length = 514
Score = 215 bits (111), Expect = 8e-61
Identities = 113/114 (99%)
Strand = Plus / Minus
Query: 1 atcccatttagttatcttctctgttgccaagttttcaaatcctttttaacccaggggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atcccatttagttatcttctctgttgccaagttttcaaatcctttttaacccaggggact 255
Query: 61 cagtccaacgtaataaaggtagcatctctctgctctatgccttangcagtcttc 114
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 254 cagtccaacgtaataaaggtagcatctctctgctctatgccttaagcagtcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space: 53636
Effective search space used: 53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
